RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	OR9Q1	Q8NGQ5	310 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	OR4Q3	Q8NH05	313 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	LYPD6B	Q8NI32	183 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	NEIL2	Q969S2	332 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	SLC25A46	Q96AG3	418 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	MALSU1	Q96EH3	234 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	SEC22A	Q96IW7	307 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	RBBP8	Q99708	897 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	MRPL57	Q9BQC6	102 aa	Known RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	C7orf50	Q9BRJ6	194 aa	Known RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	GINS4	Q9BRT9	223 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	TMED9	Q9BVK6	235 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	TAPBPL	Q9BX59	468 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	CDCA4	Q9BXL8	241 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	MFF	Q9GZY8	342 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	NXF3	Q9H4D5	531 aa	Known RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	AMBN	Q9NP70	447 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	TMEM138	Q9NPI0	162 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	SMCO4	Q9NRQ5	59 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	NRBP2	Q9NSY0	501 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	FLVCR2	Q9UPI3	526 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	SLC17A4	Q9Y2C5	497 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	COQ4	Q9Y3A0	265 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	RPL36	Q9Y3U8	105 aa	Known RBP	3.86	□□□□□ -1.79
SS18-223	ENST00000583595	COL24A1	Q17RW2	1714 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	ARAP2	Q8WZ64	1704 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	COL1A2	P08123	1366 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	RGPD2	P0DJD1	1756 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	UTRN	P46939	3433 aa		3.86	□□□□□ -1.79
SS18-223	ENST00000583595	MAST2	Q6P0Q8	1798 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	IGHV3-16	A0A0C4DH30	117 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	IFITM10	A6NMD0	228 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	OR2AT4	A6NND4	320 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595		F8VP50	259 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	FAM72C	H0Y354	149 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595		K7ENP7	123 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	GPR31	O00270	319 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	CCL21	O00585	134 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	SLC17A2	O00624	439 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	ICOSLG	O75144	302 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	GGCT	O75223	188 aa	Known RBP	3.85	□□□□□ -1.79
SS18-223	ENST00000583595	C6orf47	O95873	294 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	PIGR	P01833	764 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	MT-ND4L	P03901	98 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	IFNW1	P05000	195 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	ALDOB	P05062	364 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	CD2	P06729	351 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	GIP	P09681	153 aa	Predicted RBP	3.85	□□□□□ -1.79
SS18-223	ENST00000583595	OR8U8	P0C7N1	319 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	LAMP1	P11279	417 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	MGMT	P16455	207 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	ZNF14	P17017	642 aa	Predicted RBP	3.85	□□□□□ -1.79
SS18-223	ENST00000583595	CXCL2	P19875	107 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	PSMA1	P25786	263 aa	Known RBP	3.85	□□□□□ -1.79
SS18-223	ENST00000583595	HTR1F	P30939	366 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	CFHR2	P36980	270 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	NBL1	P41271	181 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	SRP9	P49458	86 aa	Known RBP	3.85	□□□□□ -1.79
SS18-223	ENST00000583595	GPM6A	P51674	278 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	CCR6	P51684	374 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	ATP5J2	P56134	94 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	CLDN18	P56856	261 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	OR4D2	P58180	307 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	DYNLT1	P63172	113 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	LCN2	P80188	198 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	GPR176	Q14439	515 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	NDUFAF6	Q330K2	333 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	C9orf64	Q5T6V5	341 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	BCL2L15	Q5TBC7	163 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	FAM72A	Q5TYM5	149 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	GPR157	Q5UAW9	335 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	LEMD1	Q68G75	181 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	STUM	Q69YW2	141 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	FAM72D	Q6L9T8	149 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	H3F3C	Q6NXT2	135 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	MED27	Q6P2C8	311 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	DNAJC24	Q6P3W2	148 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	LRRN1	Q6UXK5	716 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	GSG1L	Q6UXU4	331 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	ASCL4	Q6XD76	172 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	CERS6	Q6ZMG9	384 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595		Q6ZTC4	211 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	TMUB2	Q71RG4	321 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	LRRC28	Q86X40	367 aa	Predicted RBP	3.85	□□□□□ -1.79
SS18-223	ENST00000583595	FAM72B	Q86X60	149 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	ZBTB8OS	Q8IWT0	167 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	KLHDC8B	Q8IXV7	354 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	PIANP	Q8IYJ0	282 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	GPR65	Q8IYL9	337 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	LRRC18	Q8N456	261 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	SPIC	Q8N5J4	248 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	ZNF283	Q8N7M2	679 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	ATP6V1C2	Q8NEY4	427 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	BEST4	Q8NFU0	473 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	OR8J2	Q8NGG1	315 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	OR2T35	Q8NGX2	323 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	OR6K3	Q8NGY3	331 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	OR5B3	Q8NH48	314 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	PIH1D2	Q8WWB5	315 aa		3.85	□□□□□ -1.79
SS18-223	ENST00000583595	ACOT11	Q8WXI4	607 aa	Predicted RBP	3.85	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms