RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TM2D1Q9BX74 207 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 CXorf56Q9H5V9 222 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 LAMP3Q9UQV4 416 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 TPD52L2O43399 206 aaKnown RBP21.17■□□□□ 0.98
SHMT1-207ENST00000580002 PPP5CP53041 499 aa21.17■□□□□ 0.98
SHMT1-207ENST00000580002 CDH24Q86UP0 819 aa21.17■□□□□ 0.98
SHMT1-207ENST00000580002 FAM89BQ8N5H3 189 aa21.17■□□□□ 0.98
SHMT1-207ENST00000580002 BOLLQ8N9W6 283 aaKnown RBP21.17■□□□□ 0.98
SHMT1-207ENST00000580002 CHST4Q8NCG5 386 aa21.17■□□□□ 0.98
SHMT1-207ENST00000580002 LRRC29Q8WV35 223 aa21.17■□□□□ 0.98
SHMT1-207ENST00000580002 WDR12Q9GZL7 423 aaKnown RBP21.17■□□□□ 0.98
SHMT1-207ENST00000580002 FOXI3A8MTJ6 420 aaPredicted RBP21.16■□□□□ 0.98
SHMT1-207ENST00000580002 ZNF780AO75290 641 aaPredicted RBP21.16■□□□□ 0.98
SHMT1-207ENST00000580002 ZNF205O95201 554 aa21.16■□□□□ 0.98
SHMT1-207ENST00000580002 HPXP02790 462 aa21.16■□□□□ 0.98
SHMT1-207ENST00000580002 CD55P08174 381 aa21.16■□□□□ 0.98
SHMT1-207ENST00000580002 FGF12P61328 243 aa21.16■□□□□ 0.98
SHMT1-207ENST00000580002 ELP2Q6IA86 826 aa21.16■□□□□ 0.98
SHMT1-207ENST00000580002 OR10R2Q8NGX6 335 aa21.16■□□□□ 0.98
SHMT1-207ENST00000580002 EMG1Q92979 244 aaKnown RBP21.16■□□□□ 0.98
SHMT1-207ENST00000580002 CBLN4Q9NTU7 201 aa21.16■□□□□ 0.98
SHMT1-207ENST00000580002 KCNK7Q9Y2U2 307 aa21.16■□□□□ 0.98
SHMT1-207ENST00000580002 MEIOCA2RUB1 952 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 METTL21EPA6NDL7 271 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 GNB3P16520 340 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 TNFSF4P23510 183 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 RBM11P57052 281 aaKnown RBP21.15■□□□□ 0.98
SHMT1-207ENST00000580002 SNRPD2P62316 118 aaKnown RBP21.15■□□□□ 0.98
SHMT1-207ENST00000580002 GUCA2AQ02747 115 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 GPR176Q14439 515 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 FAM58AQ8N1B3 248 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 CELF2-AS1Q8N7Q2 184 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 POC1AQ8NBT0 407 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 ARHGAP5-AS1Q96IT6 56 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 MS4A5Q9H3V2 200 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 DIABLOQ9NR28 239 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 POLDIP2Q9Y2S7 368 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 LANCL1O43813 399 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 CYB5R3P00387 301 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-207ENST00000580002 BLVRBP30043 206 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-207ENST00000580002 GATA4P43694 442 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 DGCR2P98153 550 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 MZT1Q08AG7 82 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 GCSAMQ8N6F7 178 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 URM1Q9BTM9 101 aaKnown RBP21.15■□□□□ 0.98
SHMT1-207ENST00000580002 DECR2Q9NUI1 292 aa21.15■□□□□ 0.98
SHMT1-207ENST00000580002 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP21.14■□□□□ 0.97
SHMT1-207ENST00000580002 LY6HO94772 140 aa21.14■□□□□ 0.97
SHMT1-207ENST00000580002 NXPH2O95156 264 aa21.14■□□□□ 0.97
SHMT1-207ENST00000580002 CD40LGP29965 261 aa21.14■□□□□ 0.97
SHMT1-207ENST00000580002 CEBPDP49716 269 aaPredicted RBP21.14■□□□□ 0.97
SHMT1-207ENST00000580002 CDNFQ49AH0 187 aa21.14■□□□□ 0.97
SHMT1-207ENST00000580002 OR5T2Q8NGG2 359 aa21.14■□□□□ 0.97
SHMT1-207ENST00000580002 TRAF4Q9BUZ4 470 aaPredicted RBP21.14■□□□□ 0.97
SHMT1-207ENST00000580002 AUNIPQ9H7T9 357 aa21.14■□□□□ 0.97
SHMT1-207ENST00000580002 FN3KRPQ9HA64 309 aa21.14■□□□□ 0.97
SHMT1-207ENST00000580002 LYNX1G3V0Z9 82 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 NOS1APO75052 506 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-207ENST00000580002 LYNX1P0DP58 116 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 SCN1BQ07699 218 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 ZNF260Q3ZCT1 412 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 AGAP6Q5VW22 663 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 C6orf201Q7Z4U5 140 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 DTX2Q86UW9 622 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 ZNF295-AS1Q8N0V1 137 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 PHF21AQ96BD5 680 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 DIRC2Q96SL1 478 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 PLEKHF2Q9H8W4 249 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 SAP30LQ9HAJ7 183 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 HES4Q9HCC6 221 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 DOPEY2Q9Y3R5 2298 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 IGHV3OR15-7A0A075B7D8 119 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 TMEM235A6NFC5 223 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 FCER2P06734 321 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 COX6B1P14854 86 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 HIST2H2BCQ6DN03 193 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 SFRP4Q6FHJ7 346 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-207ENST00000580002 PYHIN1Q6K0P9 492 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 CACNG6Q9BXT2 260 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 CLEC4MQ9H2X3 399 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-207ENST00000580002 PPP1R3CQ9UQK1 317 aa21.13■□□□□ 0.97
SHMT1-207ENST00000580002 USF3Q68DE3 2245 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 MEIS3P1A6NDR6 274 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 CSF3P09919 207 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 GLRA1P23415 457 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 CPT2P23786 658 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 CDKN1AP38936 164 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 FAM209AQ5JX71 171 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 NKAPLQ5M9Q1 402 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 ACP7Q6ZNF0 438 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 DCDC5Q6ZRR9 648 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 Q8N402 240 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 OR56B1Q8NGI3 324 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 DYRK2Q92630 601 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 RAB3CQ96E17 227 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 ABCB10Q9NRK6 738 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 DYSFO75923 2080 aa21.12■□□□□ 0.97
SHMT1-207ENST00000580002 RAI1Q7Z5J4 1906 aaPredicted RBP21.11■□□□□ 0.97
SHMT1-207ENST00000580002 LHBP01229 141 aa21.11■□□□□ 0.97
SHMT1-207ENST00000580002 CHRM2P08172 466 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms