RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 SMURF1Q9HCE7 757 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 RBFOX1Q9NWB1 397 aaKnown RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 RASL12Q9NYN1 266 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 NLKQ9UBE8 527 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 DNAJB11Q9UBS4 358 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 SCOCQ9UIL1 159 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 MRPS28Q9Y2Q9 187 aaKnown RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 SMIM30A4D0T7 59 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 RFPL4AA6NLU0 287 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 OR2AT4A6NND4 320 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 RFPL4AL1F8VTS6 287 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 PDCD5O14737 125 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 SMAD7O15105 426 aaKnown RBP7.15□□□□□ -1.26
NUP88-211ENST00000575976 HTR3BO95264 441 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 KNG1P01042 644 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 TFF1P04155 84 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 WNT2P09544 360 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 CLEC2LP0C7M8 214 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 PSG2P11465 335 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 RAB3BP20337 219 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 MTNR1BP49286 362 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 CEBPDP49716 269 aaPredicted RBP7.15□□□□□ -1.26
NUP88-211ENST00000575976 SNU13P55769 128 aaKnown RBP7.15□□□□□ -1.26
NUP88-211ENST00000575976 KCNJ8Q15842 424 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 STUMQ69YW2 141 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 AWAT2Q6E213 333 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 GLIPR1L1Q6UWM5 242 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 DCDC5Q6ZRR9 648 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 NR2C2APQ86WQ0 139 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 ANKRD13BQ86YJ7 626 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 FAM58AQ8N1B3 248 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 MUC20Q8N307 709 aaPredicted RBP7.15□□□□□ -1.26
NUP88-211ENST00000575976 SPICQ8N5J4 248 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 CCL13Q99616 98 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 UQCC2Q9BRT2 126 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 METTL9Q9H1A3 318 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 HMG20AQ9NP66 347 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 IL36RNQ9UBH0 155 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 CTSZQ9UBR2 303 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 PCDHB10Q9UN67 800 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 V9GY05 133 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 STAB1Q9NY15 2570 aa7.15□□□□□ -1.26
NUP88-211ENST00000575976 IGKV1D-17A0A075B6S4 117 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 A0A0G2JK05 382 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 A0A1B0GW55 424 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 A0A1W2PP11 408 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 FAM157AC9JC47 383 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 F5H0A9 414 aaPredicted RBP7.14□□□□□ -1.27
NUP88-211ENST00000575976 SLC22A1O15245 554 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 ADAM20O43506 726 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 NDUFA2O43678 99 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 GABARAPO95166 117 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 IGHV2-5P01817 119 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 DUX4L2P0CJ85 424 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 DUX4L3P0CJ86 424 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 DUX4L4P0CJ87 422 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 DUX4L5P0CJ88 424 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 DUX4L6P0CJ89 424 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 DUX4L7P0CJ90 424 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 RPS2P15880 293 aaKnown RBP7.14□□□□□ -1.27
NUP88-211ENST00000575976 PRKACAP17612 351 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 SERPINA2P20848 420 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 HTR2CP28335 458 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 DUSP1P28562 367 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 PRDX2P32119 198 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 SDC2P34741 201 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 GABRA2P47869 451 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 PSMD7P51665 324 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 CAV3P56539 151 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 CLDN12P56749 244 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 FGF12P61328 243 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 SEC61A1P61619 476 aaKnown RBP7.14□□□□□ -1.27
NUP88-211ENST00000575976 NCS1P62166 190 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 MXD1Q05195 221 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 PDCD1Q15116 288 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 RSU1Q15404 277 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 SMIM21Q3B7S5 101 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 HES5Q5TA89 166 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 ATPAF1Q5TC12 328 aaPredicted RBP7.14□□□□□ -1.27
NUP88-211ENST00000575976 FAM166AQ6J272 317 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 DUX4L9Q6RFH8 374 aaPredicted RBP7.14□□□□□ -1.27
NUP88-211ENST00000575976 ZNF788Q6ZQV5 615 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 SLC16A12Q6ZSM3 486 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 TPRA1Q86W33 373 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 CLVS1Q8IUQ0 354 aaPredicted RBP7.14□□□□□ -1.27
NUP88-211ENST00000575976 Q8IYB0 196 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 CD177Q8N6Q3 437 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 Q8NFD4 153 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 OR6M1Q8NGM8 313 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 ANGPTL6Q8NI99 470 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 SLC25A28Q96A46 364 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 C12orf43Q96C57 262 aaKnown RBP7.14□□□□□ -1.27
NUP88-211ENST00000575976 NEIL1Q96FI4 390 aaPredicted RBP7.14□□□□□ -1.27
NUP88-211ENST00000575976 COX4I2Q96KJ9 171 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 C1orf147Q96MC9 270 aaPredicted RBP7.14□□□□□ -1.27
NUP88-211ENST00000575976 S100A13Q99584 98 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 ZNF665Q9H7R5 613 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 RHOFQ9HBH0 211 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 PLGRKTQ9HBL7 147 aa7.14□□□□□ -1.27
NUP88-211ENST00000575976 IL36GQ9NZH8 169 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms