RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 GAFA1Q96PS6 74 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 NIPSNAP1Q9BPW8 284 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 DCTN5Q9BTE1 182 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 NXF2Q9GZY0 626 aaKnown RBP5.5□□□□□ -1.53
VPS53-213ENST00000572334 DCSTAMPQ9H295 470 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 OPA3Q9H6K4 179 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 SIRT7Q9NRC8 400 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 CMC2Q9NRP2 79 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 C14orf119Q9NWQ9 140 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 ADAM30Q9UKF2 790 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 KLHDC2Q9Y2U9 406 aa5.5□□□□□ -1.53
VPS53-213ENST00000572334 A0A0G2JK05 382 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.49□□□□□ -1.53
VPS53-213ENST00000572334 LOC100130705A0A1B0GUX0 176 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 A0A1B0GVI7 797 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 MEIOCA2RUB1 952 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 METTL15A6NJ78 407 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 SLC22A31A6NKX4 558 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 ANKRD30BLA7E2S9 258 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 PRR32B1ATL7 298 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 SLC1A7O00341 560 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 TOR1AO14656 332 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 NPFFO15130 113 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 ORC5O43913 435 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 B3GALNT1O75752 331 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 CCNB2O95067 398 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 ANXA2P07355 339 aaKnown RBP5.49□□□□□ -1.53
VPS53-213ENST00000572334 PSMB9P28065 219 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 GRB2P62993 217 aaKnown RBP5.49□□□□□ -1.53
VPS53-213ENST00000572334 GPR50Q13585 617 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 TIGD6Q17RP2 521 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 MICBQ29980 383 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 ZBTB37Q5TC79 503 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 ZNF691Q5VV52 312 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 CRIP3Q6Q6R5 217 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 PLET1Q6UQ28 207 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 CD300LDQ6UXZ3 194 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 SLC16A12Q6ZSM3 486 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 TMEM179BQ7Z7N9 219 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 C1QL4Q86Z23 238 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 ADGRG5Q8IZF4 528 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 SLC38A6Q8IZM9 456 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 LINC00471Q8N535 108 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 C11orf42Q8N5U0 333 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 GDPD1Q8N9F7 314 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 SCCPDHQ8NBX0 429 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 OR2T33Q8NG76 320 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 OR6K6Q8NGW6 343 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 OR6N2Q8NGY6 317 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 OR8S1Q8NH09 359 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 PPP1R35Q8TAP8 253 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 DEDD2Q8WXF8 326 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 OR5P3Q8WZ94 311 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 AP3S1Q92572 193 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 SNAPC3Q92966 411 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 OTULINQ96BN8 352 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 OPALINQ96PE5 141 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 INTS14Q96SY0 518 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 SLIRPQ9GZT3 109 aaKnown RBP5.49□□□□□ -1.53
VPS53-213ENST00000572334 NAA50Q9GZZ1 169 aaKnown RBP5.49□□□□□ -1.53
VPS53-213ENST00000572334 TOR3AQ9H497 397 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 SNTG1Q9NSN8 517 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 FAM118AQ9NWS6 357 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 HAO2Q9NYQ3 351 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 DNAJC27Q9NZQ0 273 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 ONECUT1Q9UBC0 465 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 DNAJB11Q9UBS4 358 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 ZNF222Q9UK12 451 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 VPREB3Q9UKI3 123 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 BAIAP2Q9UQB8 552 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 MAB21L2Q9Y586 359 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 U3KQV3 271 aa5.49□□□□□ -1.53
VPS53-213ENST00000572334 IGKV1D-17A0A075B6S4 117 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 ZNF816-ZNF321PA0A0X1KG74 233 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 A0A1W2PRD5 423 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 A0A1W2PRF3 423 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 A0A1W2PRM7 423 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 ZNF850A8MQ14 1090 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 M0QZ24 198 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 DLGAP1O14490 977 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 TIMM23O14925 209 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 GPR37O15354 613 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 SIGLEC5O15389 551 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 RGS5O15539 181 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 AKR7A2O43488 359 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 SELENOFO60613 162 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 PEX14O75381 377 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 ZNF254O75437 659 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 RHBDL1O75783 438 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 GLCEO94923 617 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 CST4P01036 141 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 IGLV3-1P01715 115 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 APOC1P02654 83 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 ALPLP05186 524 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 GNAO1P09471 354 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 DBTP11182 482 aaKnown RBP5.48□□□□□ -1.53
VPS53-213ENST00000572334 CD36P16671 472 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 SLC2A5P22732 501 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 PAX6P26367 422 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 GRK5P34947 590 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms