RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 KDELR2P33947 212 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 NR4A2P43354 598 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 ZNF136P52737 540 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 ZP1P60852 638 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 SKP2Q13309 424 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 MED21Q13503 144 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 TRAM2Q15035 370 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 PON3Q15166 354 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 QPRTQ15274 297 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 TWIST1Q15672 202 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 TNXAQ16473 311 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 TMEM176BQ3YBM2 270 aaPredicted RBP5.1□□□□□ -1.59
VPS53-212ENST00000572259 FBXL19-AS1Q494R0 122 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 GRINAQ7Z429 371 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 FUNDC1Q8IVP5 155 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 C9orf106Q8NAJ2 232 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 C19orf18Q8NEA5 215 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 ATP6V1C2Q8NEY4 427 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 OR1B1Q8NGR6 318 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 OR52P1PQ8NH57 321 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 OR10D3Q8NH80 312 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 PLPPR1Q8TBJ4 325 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 MRAPQ8TCY5 172 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 HSD17B8Q92506 261 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 SLC35B4Q969S0 331 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 MRPL24Q96A35 216 aaKnown RBP5.1□□□□□ -1.59
VPS53-212ENST00000572259 DDIT4LQ96D03 193 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 GMPPAQ96IJ6 420 aaPredicted RBP5.1□□□□□ -1.59
VPS53-212ENST00000572259 CLCC1Q96S66 551 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 PPA2Q9H2U2 334 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 SLC25A19Q9HC21 320 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 BCL2L10Q9HD36 194 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 A4GALTQ9NPC4 353 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 ACER3Q9NUN7 267 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 GID8Q9NWU2 228 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 PROCRQ9UNN8 238 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 ANGPT4Q9Y264 503 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 AP3M1Q9Y2T2 418 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 AK6Q9Y3D8 172 aaKnown RBP5.1□□□□□ -1.59
VPS53-212ENST00000572259 L3MBTL1Q9Y468 752 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 NBPF19A0A087WUL8 3843 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 ANKRD17O75179 2603 aaKnown RBP5.1□□□□□ -1.59
VPS53-212ENST00000572259 A0A1W2PRF3 423 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 A0A1W2PRM7 423 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 PRORSD1PA6NEY8 169 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 C17orf51A8MQB3 221 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 H3BN98 237 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 SULT2B1O00204 365 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 FAAHO00519 579 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 DYNC1I1O14576 645 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 TNFSF11O14788 317 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 CXCL13O43927 109 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 EIF1BO60739 113 aaKnown RBP5.09□□□□□ -1.59
VPS53-212ENST00000572259 IGHG4P01861 327 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 TFAP2AP05549 437 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 CTXN2P0C2S0 81 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 FAM106CPP0CH98 169 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 GATA1P15976 413 aaPredicted RBP5.09□□□□□ -1.59
VPS53-212ENST00000572259 GPX2P18283 190 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 CXCR1P25024 350 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 IDH2P48735 452 aaKnown RBP5.09□□□□□ -1.59
VPS53-212ENST00000572259 POLR2HP52434 150 aaKnown RBP5.09□□□□□ -1.59
VPS53-212ENST00000572259 ACTBP60709 375 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 NCALDP61601 193 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 ACTA2P62736 377 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 ACTG1P63261 375 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 ACTG2P63267 376 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 ACTC1P68032 377 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 ACTA1P68133 377 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 CDK6Q00534 326 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 FOXF1Q12946 379 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 RBM39Q14498 530 aaKnown RBP5.09□□□□□ -1.59
VPS53-212ENST00000572259 SLC17A1Q14916 467 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 MAPK14Q16539 360 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 CYP51A1Q16850 503 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 CYBRD1Q53TN4 286 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 PAGE3Q5JUK9 113 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 MRPL2Q5T653 305 aaKnown RBP5.09□□□□□ -1.59
VPS53-212ENST00000572259 Q71RC1 249 aaPredicted RBP5.09□□□□□ -1.59
VPS53-212ENST00000572259 FCRLAQ7L513 359 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 ZNF554Q86TJ5 538 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 RELL2Q8NC24 303 aaPredicted RBP5.09□□□□□ -1.59
VPS53-212ENST00000572259 OR6N2Q8NGY6 317 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 FNDC9Q8TBE3 224 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 FAM222BQ8WU58 562 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 RASSF5Q8WWW0 418 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 ISOC2Q96AB3 205 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 AURKBQ96GD4 344 aaPredicted RBP5.09□□□□□ -1.59
VPS53-212ENST00000572259 OR5B2Q96R09 309 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 CGREF1Q99674 301 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 SYT4Q9H2B2 425 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 TMEM38AQ9H6F2 299 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 RNF122Q9H9V4 155 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 DCAF13Q9NV06 445 aaKnown RBP5.09□□□□□ -1.59
VPS53-212ENST00000572259 VAPAQ9P0L0 249 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 RNF7Q9UBF6 113 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 RPS6KB2Q9UBS0 482 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 TRAPPC4Q9Y296 219 aa5.09□□□□□ -1.59
VPS53-212ENST00000572259 ZNF443Q9Y2A4 671 aaPredicted RBP5.09□□□□□ -1.59
VPS53-212ENST00000572259 HDGFL3Q9Y3E1 203 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms