RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ATP6V1G3Q96LB4 118 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 NKIRAS1Q9NYS0 192 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 ENPP4Q9Y6X5 453 aa14.04□□□□□ -0.16
CLK3-227ENST00000570296 HMGB1P1B2RPK0 211 aaPredicted RBP14.03□□□□□ -0.16
CLK3-227ENST00000570296 BUB1B-PAK6H3BSN5 160 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 FXYD1O00168 92 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 HAGHQ16775 308 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 HLA-DRB5Q30154 266 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 HSP90B2PQ58FF3 399 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 Q8N1Y9 231 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 ZNF511Q8NB15 262 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 OR2T12Q8NG77 320 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 OR1N2Q8NGR9 330 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 ITFG2Q969R8 447 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 TLCD1Q96CP7 247 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 PCDHB16Q9NRJ7 776 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 MUC4Q99102 2169 aa14.03□□□□□ -0.16
CLK3-227ENST00000570296 TRBV4-1A0A0J9YWV2 114 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 OVOL1O14753 267 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 ZNF682O95780 498 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 TMEM11P17152 192 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 CD34P28906 385 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 OPRL1P41146 370 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 MAP2K3P46734 347 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 CBX1P83916 185 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 ZNF616Q08AN1 781 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 EDDM3AQ14507 147 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 ASPHD1Q5U4P2 390 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 CBLL1Q75N03 491 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 ZNF573Q86YE8 665 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 NIPAL2Q9H841 368 aa14.02□□□□□ -0.17
CLK3-227ENST00000570296 LINC01548A6NM66 108 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 IGHG4P01861 327 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 SNRPBP14678 240 aaKnown RBP14.01□□□□□ -0.17
CLK3-227ENST00000570296 CNTFRP26992 372 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 HAAOP46952 286 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 GPR12P47775 334 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 RUNX1Q01196 453 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 LCN1P1Q5VSP4 162 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 PLCXD3Q63HM9 321 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 BAIAP2L2Q6UXY1 529 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 FKBP9P1Q75LS8 142 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 EME1Q96AY2 570 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 HSH2DQ96JZ2 352 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 SNX22Q96L94 193 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 ABHD6Q9BV23 337 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 ZNF446Q9NWS9 450 aa14.01□□□□□ -0.17
CLK3-227ENST00000570296 UBE2J1Q9Y385 318 aaPredicted RBP14.01□□□□□ -0.17
CLK3-227ENST00000570296 H3BSH0 61 aa14□□□□□ -0.17
CLK3-227ENST00000570296 TOR1AO14656 332 aa14□□□□□ -0.17
CLK3-227ENST00000570296 ERVK11-1P61568 191 aa14□□□□□ -0.17
CLK3-227ENST00000570296 GABPB1Q06547 395 aaPredicted RBP14□□□□□ -0.17
CLK3-227ENST00000570296 HES1Q14469 280 aa14□□□□□ -0.17
CLK3-227ENST00000570296 PRAMEF5Q5TYX0 476 aa14□□□□□ -0.17
CLK3-227ENST00000570296 HEPN1Q6WQI6 88 aa14□□□□□ -0.17
CLK3-227ENST00000570296 MOB3CQ70IA8 216 aa14□□□□□ -0.17
CLK3-227ENST00000570296 OR56B4Q8NH76 319 aa14□□□□□ -0.17
CLK3-227ENST00000570296 DCUN1D4Q92564 292 aa14□□□□□ -0.17
CLK3-227ENST00000570296 GHITMQ9H3K2 345 aa14□□□□□ -0.17
CLK3-227ENST00000570296 DCAF13Q9NV06 445 aaKnown RBP14□□□□□ -0.17
CLK3-227ENST00000570296 CHCHD3Q9NX63 227 aaKnown RBP14□□□□□ -0.17
CLK3-227ENST00000570296 I3L521 148 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 RRP9O43818 475 aaKnown RBP13.99□□□□□ -0.17
CLK3-227ENST00000570296 NPPAP01160 153 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 H2BFMP0C1H6 154 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 MPZP25189 248 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 BLVRAP53004 296 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 PRRX1P54821 245 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 CFHR3Q02985 330 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 TRAPPC6BQ86SZ2 158 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 TPRX1Q8N7U7 411 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 MYOZ3Q8TDC0 251 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 FUZQ9BT04 418 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 GAL3ST2Q9H3Q3 398 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 ZNF286AQ9HBT8 521 aa13.99□□□□□ -0.17
CLK3-227ENST00000570296 FAM32AQ9Y421 112 aaKnown RBP13.99□□□□□ -0.17
CLK3-227ENST00000570296 TMEM82A0PJX8 343 aa13.98□□□□□ -0.17
CLK3-227ENST00000570296 CDK2P24941 298 aa13.98□□□□□ -0.17
CLK3-227ENST00000570296 PSMB8P28062 276 aa13.98□□□□□ -0.17
CLK3-227ENST00000570296 KIR3DL2P43630 455 aa13.98□□□□□ -0.17
CLK3-227ENST00000570296 BATF2Q8N1L9 274 aa13.98□□□□□ -0.17
CLK3-227ENST00000570296 OR8B12Q8NGG6 310 aa13.98□□□□□ -0.17
CLK3-227ENST00000570296 TRMT10AQ8TBZ6 339 aaKnown RBP13.98□□□□□ -0.17
CLK3-227ENST00000570296 TOMM40LQ969M1 308 aa13.98□□□□□ -0.17
CLK3-227ENST00000570296 RPEQ96AT9 228 aa13.98□□□□□ -0.17
CLK3-227ENST00000570296 HRASLS5Q96KN8 279 aa13.98□□□□□ -0.17
CLK3-227ENST00000570296 UBE2E2Q96LR5 201 aa13.98□□□□□ -0.17
CLK3-227ENST00000570296 MED4Q9NPJ6 270 aa13.98□□□□□ -0.17
CLK3-227ENST00000570296 ATP6V1B1P15313 513 aa13.97□□□□□ -0.17
CLK3-227ENST00000570296 RHCEP18577 417 aa13.97□□□□□ -0.17
CLK3-227ENST00000570296 PEX2P28328 305 aa13.97□□□□□ -0.17
CLK3-227ENST00000570296 GRK1Q15835 563 aa13.97□□□□□ -0.17
CLK3-227ENST00000570296 ZNF684Q5T5D7 378 aa13.97□□□□□ -0.17
CLK3-227ENST00000570296 ACSM6Q6P461 480 aa13.97□□□□□ -0.17
CLK3-227ENST00000570296 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.97□□□□□ -0.17
CLK3-227ENST00000570296 RPP25LQ8N5L8 163 aaKnown RBP13.97□□□□□ -0.17
CLK3-227ENST00000570296 SLC37A3Q8NCC5 494 aa13.97□□□□□ -0.17
CLK3-227ENST00000570296 STON2Q8WXE9 905 aa13.97□□□□□ -0.17
CLK3-227ENST00000570296 DHRS1Q96LJ7 313 aa13.97□□□□□ -0.17
CLK3-227ENST00000570296 AMELYQ99218 206 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms