RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PIAS2O75928 621 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 FBP1P09467 338 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 TUBG1P23258 451 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 ZNF774Q6NX45 483 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 BTNL8Q6UX41 500 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 GSN-AS1Q9NRJ2 163 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 FAM86C1Q9NVL1 165 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 NSG1A0A0A6YYJ2 146 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 TP53I11O14683 189 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 FCGR3AP08637 254 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 ARL6IP1Q15041 203 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 SNAI3Q3KNW1 292 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 OR1J1Q8NGS3 322 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 ZNF837Q96EG3 531 aaPredicted RBP12.67□□□□□ -0.38
VPS35-210ENST00000568784 C1orf147Q96MC9 270 aaPredicted RBP12.67□□□□□ -0.38
VPS35-210ENST00000568784 PAPOLGQ9BWT3 736 aaKnown RBP12.67□□□□□ -0.38
VPS35-210ENST00000568784 PQLC2LA1A4F0 135 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 LGI3Q8N145 548 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 ABHD14AQ9BUJ0 271 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 ZNF286AQ9HBT8 521 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 SLC2A9Q9NRM0 540 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 NCOR1O75376 2440 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 ZNF724A8MTY0 619 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 DHHO43323 396 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 GDF9O60383 454 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 ZNF17P17021 662 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 DCDP81605 110 aaKnown RBP12.66□□□□□ -0.38
VPS35-210ENST00000568784 RHEBQ15382 184 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 AKR1C8PQ5T2L2 129 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 SLC39A7Q92504 469 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 ZNF251Q9BRH9 671 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 NAA60Q9H7X0 242 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 P4HTMQ9NXG6 502 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 PMS2P1A4D2B8 440 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 HSPA12AO43301 675 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 ACKR3P25106 362 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 RUNX1Q01196 453 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 SPEM2Q0P670 501 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 MALLQ13021 153 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 MR1Q95460 341 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 SHDQ96IW2 340 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 FSCN3Q9NQT6 498 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 LIPGQ9Y5X9 500 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 HSD17B6O14756 317 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 CTSDP07339 412 aaPredicted RBP12.66□□□□□ -0.38
VPS35-210ENST00000568784 ZNF343Q6P1L6 599 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 YRDCQ86U90 279 aaKnown RBP12.66□□□□□ -0.38
VPS35-210ENST00000568784 OR6X1Q8NH79 312 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 POC1BQ8TC44 478 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 ZNF501Q96CX3 271 aaPredicted RBP12.66□□□□□ -0.38
VPS35-210ENST00000568784 LYZL4Q96KX0 146 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 MRPL13Q9BYD1 178 aaKnown RBP12.66□□□□□ -0.38
VPS35-210ENST00000568784 SLC35B3Q9H1N7 401 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 PLA2G2EQ9NZK7 142 aa12.66□□□□□ -0.38
VPS35-210ENST00000568784 TNFSF11O14788 317 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 NKX2-1P43699 371 aaPredicted RBP12.65□□□□□ -0.38
VPS35-210ENST00000568784 RBP2P50120 134 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 SHBQ15464 509 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 CLEC12BQ2HXU8 276 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 LYPD6Q86Y78 171 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 GPR137CQ8N3F9 429 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 KIAA2026Q5HYC2 2103 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.65□□□□□ -0.38
VPS35-210ENST00000568784 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.65□□□□□ -0.38
VPS35-210ENST00000568784 ZFP92A6NM28 416 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 HLA-HP01893 362 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 H2AFB1P0C5Y9 115 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 THBS4P35443 961 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 SNCAP37840 140 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 HMGN3Q15651 99 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 D2HGDHQ8N465 521 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 UBALD1Q8TB05 177 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 IL1F10Q8WWZ1 152 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 OIT3Q8WWZ8 545 aa12.65□□□□□ -0.38
VPS35-210ENST00000568784 IGHV3-64DA0A0J9YX35 117 aa12.65□□□□□ -0.39
VPS35-210ENST00000568784 NR2C1P13056 603 aa12.65□□□□□ -0.39
VPS35-210ENST00000568784 MDKP21741 143 aaPredicted RBP12.65□□□□□ -0.39
VPS35-210ENST00000568784 TSC22D1Q15714 1073 aa12.65□□□□□ -0.39
VPS35-210ENST00000568784 SLC25A47Q6Q0C1 308 aa12.65□□□□□ -0.39
VPS35-210ENST00000568784 STX12Q86Y82 276 aa12.65□□□□□ -0.39
VPS35-210ENST00000568784 HAS2Q92819 552 aa12.65□□□□□ -0.39
VPS35-210ENST00000568784 WFDC1Q9HC57 220 aa12.65□□□□□ -0.39
VPS35-210ENST00000568784 CD5P06127 495 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 MPZP25189 248 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 ZNF133P52736 654 aaPredicted RBP12.64□□□□□ -0.39
VPS35-210ENST00000568784 SLC25A26Q70HW3 274 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 OR51H1Q8NH63 302 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 OR14L1PQ8NHC6 308 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 SPACA9Q96E40 222 aaPredicted RBP12.64□□□□□ -0.39
VPS35-210ENST00000568784 RASL10BQ96S79 203 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 WBP1LQ9NX94 342 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 ZMAT5Q9UDW3 170 aaKnown RBP12.64□□□□□ -0.39
VPS35-210ENST00000568784 NKX2-6A6NCS4 301 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 GPR137BO60478 399 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 SMIM6P0DI80 62 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 SRYQ05066 204 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 ACER2Q5QJU3 275 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 PHYHD1Q5SRE7 291 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 GPR157Q5UAW9 335 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 LHFPL1Q86WI0 220 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms