RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 Q6ZPA2 131 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 COQ8AQ8NI60 647 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 MARS2Q96GW9 593 aaKnown RBP17.46■□□□□ 0.39
CLN3-230ENST00000568076 MBD2Q9UBB5 411 aa17.46■□□□□ 0.39
CLN3-230ENST00000568076 LOC400499M0QZD8 3231 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 PDCD6O75340 191 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 OR2F2O95006 317 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 KNG1P01042 644 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 OR5H8P0DN80 308 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 PGAM2P15259 253 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 WNT5AP41221 380 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 OR2F1Q13607 317 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 BEX5Q5H9J7 111 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 ZNF318Q5VUA4 2279 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 ASPMQ8IZT6 3477 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 Q8NFD4 153 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 BCL2L2Q92843 193 aaPredicted RBP17.45■□□□□ 0.38
CLN3-230ENST00000568076 DMRTA2Q96SC8 542 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 VRK1Q99986 396 aaPredicted RBP17.45■□□□□ 0.38
CLN3-230ENST00000568076 NMES1Q9C002 83 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 CHMP1AQ9HD42 196 aaPredicted RBP17.45■□□□□ 0.38
CLN3-230ENST00000568076 RAB18Q9NP72 206 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 DECR2Q9NUI1 292 aa17.45■□□□□ 0.38
CLN3-230ENST00000568076 EP300Q09472 2414 aaPredicted RBP17.45■□□□□ 0.38
CLN3-230ENST00000568076 POM121CA8CG34 1229 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 WISP2O76076 250 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 CST4P01036 141 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 RLN2P04090 185 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 PSMB6P28072 239 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 PTGER4P35408 488 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 GPM6AP51674 278 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 PLP2Q04941 152 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 CXorf58Q96LI9 332 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 KCNAB3O43448 404 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 ZNF205O95201 554 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 AANATQ16613 207 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 CEACAM21Q3KPI0 293 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 ACOT7LQ6ZUV0 252 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 ZDHHC23Q8IYP9 409 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 THAP6Q8TBB0 222 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 SLAMF9Q96A28 289 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 HS3ST6Q96QI5 342 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 PCDHB16Q9NRJ7 776 aa17.44■□□□□ 0.38
CLN3-230ENST00000568076 F8VVB4 439 aa17.43■□□□□ 0.38
CLN3-230ENST00000568076 F8VWA3 439 aa17.43■□□□□ 0.38
CLN3-230ENST00000568076 BCL3P20749 454 aa17.43■□□□□ 0.38
CLN3-230ENST00000568076 HAAOP46952 286 aa17.43■□□□□ 0.38
CLN3-230ENST00000568076 CLN3Q13286 438 aa17.43■□□□□ 0.38
CLN3-230ENST00000568076 RGS7BPQ6MZT1 257 aaPredicted RBP17.43■□□□□ 0.38
CLN3-230ENST00000568076 ST8SIA2Q92186 375 aa17.43■□□□□ 0.38
CLN3-230ENST00000568076 ZNF75AQ96N20 296 aa17.43■□□□□ 0.38
CLN3-230ENST00000568076 RNF126Q9BV68 326 aa17.43■□□□□ 0.38
CLN3-230ENST00000568076 NECAP2Q9NVZ3 263 aa17.43■□□□□ 0.38
CLN3-230ENST00000568076 C14orf166Q9Y224 244 aaKnown RBP17.43■□□□□ 0.38
CLN3-230ENST00000568076 TNRC6AQ8NDV7 1962 aaKnown RBP17.42■□□□□ 0.38
CLN3-230ENST00000568076 BCL2L11O43521 198 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 DHRS11Q6UWP2 260 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 MARVELD3Q96A59 401 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 ZNF175Q9Y473 711 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 ZFHX4Q86UP3 3567 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 DOCK7Q96N67 2140 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 FAM186AA6NE01 2351 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 CD300LBA8K4G0 201 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 H0YIZ8 118 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 LILRA1O75019 489 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 OR7C1O76099 320 aaPredicted RBP17.42■□□□□ 0.38
CLN3-230ENST00000568076 CTSDP07339 412 aaPredicted RBP17.42■□□□□ 0.38
CLN3-230ENST00000568076 ZNF250P15622 560 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 FUT3P21217 361 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 APLNRP35414 380 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 ECI1P42126 302 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 MDP1Q86V88 176 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 BHLHE23Q8NDY6 225 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 OR5M9Q8NGP3 310 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 OR10C1Q96KK4 312 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 REG4Q9BYZ8 158 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 GP6Q9HCN6 339 aa17.42■□□□□ 0.38
CLN3-230ENST00000568076 DMXL1Q9Y485 3027 aa17.41■□□□□ 0.38
CLN3-230ENST00000568076 ZNF732B4DXR9 585 aa17.41■□□□□ 0.38
CLN3-230ENST00000568076 I3L521 148 aa17.41■□□□□ 0.38
CLN3-230ENST00000568076 PDGFAP04085 211 aa17.41■□□□□ 0.38
CLN3-230ENST00000568076 UBA52P62987 128 aaKnown RBP17.41■□□□□ 0.38
CLN3-230ENST00000568076 CYCSP99999 105 aaKnown RBP17.41■□□□□ 0.38
CLN3-230ENST00000568076 SLC22A25Q6T423 547 aa17.41■□□□□ 0.38
CLN3-230ENST00000568076 ANGPTL6Q8NI99 470 aa17.41■□□□□ 0.38
CLN3-230ENST00000568076 OR51B6Q9H340 312 aa17.41■□□□□ 0.38
CLN3-230ENST00000568076 MTCH1Q9NZJ7 389 aa17.41■□□□□ 0.38
CLN3-230ENST00000568076 TRBV6-7A0A0A0MS04 114 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 KANTRA0A1W2PQU2 76 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 IGHG3P01860 377 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 ELP2Q6IA86 826 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 IGFL2Q6UWQ7 119 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 GMPPAQ96IJ6 420 aaPredicted RBP17.4■□□□□ 0.38
CLN3-230ENST00000568076 C12orf4Q9NQ89 552 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 CLCF1Q9UBD9 225 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 IL36RNQ9UBH0 155 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 hCG_1807616A0A1W2PRN6 198 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 LRP3O75074 770 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 IFNA2P01563 188 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 LUMP51884 338 aaPredicted RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms