RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 TCF7L1Q9HCS4 588 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 F8VVB4 439 aa18.29■□□□□ 0.52
CLN3-215ENST00000565236 F8VWA3 439 aa18.29■□□□□ 0.52
CLN3-215ENST00000565236 COX7A1P24310 79 aa18.29■□□□□ 0.52
CLN3-215ENST00000565236 ZNF273Q14593 569 aa18.29■□□□□ 0.52
CLN3-215ENST00000565236 CCDC121Q6ZUS5 278 aa18.29■□□□□ 0.52
CLN3-215ENST00000565236 GDPD3Q7L5L3 318 aa18.29■□□□□ 0.52
CLN3-215ENST00000565236 OR2G2Q8NGZ5 317 aa18.29■□□□□ 0.52
CLN3-215ENST00000565236 AJUBAQ96IF1 538 aa18.29■□□□□ 0.52
CLN3-215ENST00000565236 WNK1Q9H4A3 2382 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 SNTNA6NMZ2 147 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 H3BNX3 289 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 RBP2P50120 134 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 ALDH3A2P51648 485 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 ATP1B3P54709 279 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 EDDM3BP56851 147 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 LY6EQ16553 131 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 OCLNQ16625 522 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 LRRC75BQ2VPJ9 315 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 SLC35E4Q6ICL7 350 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 C10orf67Q8IYJ2 551 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 DNAAF1Q8NEP3 725 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 RNF166Q96A37 237 aaPredicted RBP18.28■□□□□ 0.52
CLN3-215ENST00000565236 FRRS1LQ9P0K9 344 aa18.28■□□□□ 0.52
CLN3-215ENST00000565236 VWFP04275 2813 aa18.27■□□□□ 0.52
CLN3-215ENST00000565236 SLC16A6O15403 523 aa18.27■□□□□ 0.52
CLN3-215ENST00000565236 ZNF737O75373 536 aa18.27■□□□□ 0.52
CLN3-215ENST00000565236 CYB5AP00167 134 aa18.27■□□□□ 0.52
CLN3-215ENST00000565236 ZNF20P17024 532 aa18.27■□□□□ 0.52
CLN3-215ENST00000565236 OR12D2P58182 307 aa18.27■□□□□ 0.52
CLN3-215ENST00000565236 AANATQ16613 207 aa18.27■□□□□ 0.52
CLN3-215ENST00000565236 ASPHD2Q6ICH7 369 aa18.27■□□□□ 0.52
CLN3-215ENST00000565236 ZNF782Q6ZMW2 699 aaPredicted RBP18.27■□□□□ 0.52
CLN3-215ENST00000565236 Q8IYB0 196 aa18.27■□□□□ 0.52
CLN3-215ENST00000565236 EMG1Q92979 244 aaKnown RBP18.27■□□□□ 0.52
CLN3-215ENST00000565236 FGGYQ96C11 551 aa18.27■□□□□ 0.52
CLN3-215ENST00000565236 ADAT3Q96EY9 351 aaPredicted RBP18.27■□□□□ 0.52
CLN3-215ENST00000565236 CMYA5Q8N3K9 4069 aa18.27■□□□□ 0.51
CLN3-215ENST00000565236 C17orf98A8MV24 154 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 J3QRE1 110 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 ISG15P05161 165 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 HTR1AP08908 422 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 ZNF728P0DKX0 622 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 PRKACBP22694 351 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 PAX6P26367 422 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 BMXP51813 675 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 MTCP1P56278 107 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 FDX2Q6P4F2 183 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 ENTHD1Q8IYW4 607 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 OR8H2Q8N162 312 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 CBR4Q8N4T8 237 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 ACBD7Q8N6N7 88 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 SNX22Q96L94 193 aa18.26■□□□□ 0.51
CLN3-215ENST00000565236 J3QLW9 94 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 KCNAB3O43448 404 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 OCM2P0CE71 109 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 OCMP0CE72 109 aaPredicted RBP18.25■□□□□ 0.51
CLN3-215ENST00000565236 ZNF19P17023 458 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 ATF1P18846 271 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 GABRA5P31644 462 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 POU3F4P49335 361 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 DLX6P56179 175 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 NANOS3P60323 173 aaKnown RBP18.25■□□□□ 0.51
CLN3-215ENST00000565236 UTS2BQ765I0 119 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 OR13D1Q8NGV5 346 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 MRPL48Q96GC5 212 aaKnown RBP18.25■□□□□ 0.51
CLN3-215ENST00000565236 RAB18Q9NP72 206 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 FBLN5Q9UBX5 448 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 EXOGQ9Y2C4 368 aaKnown RBP18.25■□□□□ 0.51
CLN3-215ENST00000565236 GMPPBQ9Y5P6 360 aa18.25■□□□□ 0.51
CLN3-215ENST00000565236 IGKV1-9A0A0C4DH69 117 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 MEX3AA1L020 520 aaKnown RBP18.24■□□□□ 0.51
CLN3-215ENST00000565236 E9PQ18 207 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 HAND1O96004 215 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 AZGP1P25311 298 aaKnown RBP18.24■□□□□ 0.51
CLN3-215ENST00000565236 CCR9P51686 369 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 ACTA2P62736 377 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 ACTG2P63267 376 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 MEF2CQ06413 473 aaPredicted RBP18.24■□□□□ 0.51
CLN3-215ENST00000565236 EDDM3AQ14507 147 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 LHFPL2Q6ZUX7 228 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 FAM58AQ8N1B3 248 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 MYCBPQ99417 103 aaPredicted RBP18.24■□□□□ 0.51
CLN3-215ENST00000565236 MMP27Q9H306 513 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 SEBOXQ9HB31 216 aaPredicted RBP18.24■□□□□ 0.51
CLN3-215ENST00000565236 AASSQ9UDR5 926 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 HHLA2Q9UM44 414 aa18.24■□□□□ 0.51
CLN3-215ENST00000565236 TMEM82A0PJX8 343 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 RBP4P02753 201 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 BCL3P20749 454 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 GABRR1P24046 479 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 PEX2P28328 305 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 DUSP1P28562 367 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 NPBWR2P48146 333 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 DEFA6Q01524 100 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 LHFPL4Q7Z7J7 247 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 OR4C13Q8NGP0 309 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 OR13C3Q8NGS6 347 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 PPP1R35Q8TAP8 253 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 SPSB1Q96BD6 273 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms