RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 WDR82Q6UXN9 313 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 TIFABQ6ZNK6 161 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 Q6ZVH6 145 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 PRSS41Q7RTY9 318 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 LACC1Q8IV20 430 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 SLC22A18ASQ8N1D0 253 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 SLC25A45Q8N413 288 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 SAMD12Q8N8I0 201 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 TLCD1Q96CP7 247 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 WBP1Q96G27 269 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 TMEM80Q96HE8 168 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 CEP19Q96LK0 163 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 MRPL57Q9BQC6 102 aaKnown RBP4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 AIF1LQ9BQI0 150 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 DUSP26Q9BV47 211 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 FBXO8Q9NRD0 319 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 SLC2A9Q9NRM0 540 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 C19orf12Q9NSK7 152 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 SAMD4AQ9UPU9 718 aaKnown RBP4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 NEUROG3Q9Y4Z2 214 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 RALGAPA1Q6GYQ0 2036 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 COL4A2P08572 1712 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 SPAG17Q6Q759 2223 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 PHF3Q92576 2039 aaKnown RBP4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 TINCRA0A1B0GVN0 87 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 ISPDA4D126 451 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 FAM159BA6NKW6 160 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 C10orf142B7Z368 130 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 RAD1O60671 282 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 SCRG1O75711 98 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 C1QL1O75973 258 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 IGHV3-9P01782 118 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 TYMSP04818 313 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 ARG1P05089 322 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 HMGN1P05114 100 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 FCGR3AP08637 254 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 OR8U9P0C7N5 309 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 CCDC166P0CW27 439 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 FUT3P21217 361 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 ATP6V1B2P21281 511 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 LOXP28300 417 aaPredicted RBP4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 FCGR2CP31995 323 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 CEACAM6P40199 344 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 GALR1P47211 349 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 HNRNPA3P51991 378 aaKnown RBP4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 MFAP2P55001 183 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 CRADDP78560 199 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 FAM3AP98173 230 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 SEMG2Q02383 582 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 CD164Q04900 197 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 POU2AF1Q16633 256 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 ZNF658BQ4V348 819 aaPredicted RBP4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 AKIRIN2Q53H80 203 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 LINC00242Q5T6M2 205 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 C10orf25Q5T742 122 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 C8orf82Q6P1X6 216 aaPredicted RBP4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 CD200R1LQ6Q8B3 271 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 TFAP2EQ6VUC0 442 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 RBMS3Q6XE24 437 aaKnown RBP4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 PIP4P1Q86T03 277 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 DEFB124Q8NES8 71 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 OR4E2Q8NGC2 313 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 OR8U1Q8NH10 309 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 SYNPRQ8TBG9 265 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 SLC37A2Q8TED4 501 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 ZNRF4Q8WWF5 429 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 TESCQ96BS2 214 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 PDXPQ96GD0 296 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 TSNAXQ99598 290 aaKnown RBP4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 GPR21Q99679 349 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 EFCAB11Q9BUY7 163 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 TMEM109Q9BVC6 243 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 DDA1Q9BW61 102 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 OSBPL11Q9BXB4 747 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 CDC42EP4Q9H3Q1 356 aaKnown RBP4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 METTL17Q9H7H0 456 aaPredicted RBP4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 REEP1Q9H902 201 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 FKRPQ9H9S5 495 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 EBF2Q9HAK2 575 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 BATF3Q9NR55 127 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 FBXO6Q9NRD1 293 aaPredicted RBP4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 OPTCQ9UBM4 332 aa4.21□□□□□ -1.74
VPS35P1-201ENST00000563400 PTPRZ1P23471 2315 aaPredicted RBP4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 SZT2Q5T011 3432 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 CDH23Q9H251 3354 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 IGHV1OR21-1A0A087WYE8 117 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 IGLV5-39A0A0G2JS06 123 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 A0A0J9YY10 115 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 A0A1B0GWB2 263 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 NCBP2LA6PVI3 153 aaKnown RBP4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 E7EQ34 232 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 PSMD12O00232 456 aaPredicted RBP4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 SLC16A7O60669 478 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 ICOSLGO75144 302 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 STK16O75716 305 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 AQP8O94778 261 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 CNIH1O95406 144 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 SLC2A10O95528 541 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 SOD1P00441 154 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 CD8AP01732 235 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms