RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 EXOGQ9Y2C4 368 aaKnown RBP13.77□□□□□ -0.21
CLK3-210ENST00000563112 IGKV1-27A0A075B6S5 117 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 E9PQ18 207 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 K7N7A8 449 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 INMTO95050 263 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 ISG15P05161 165 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 CCR9P51686 369 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 COL10A1Q03692 680 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 TAF9Q16594 264 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 DHRS7BQ6IAN0 325 aaPredicted RBP13.76□□□□□ -0.21
CLK3-210ENST00000563112 UTS2BQ765I0 119 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 GDPD3Q7L5L3 318 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 ENTHD1Q8IYW4 607 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 FGGYQ96C11 551 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 LGALS12Q96DT0 336 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 MBOAT4Q96T53 435 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 NEK6Q9HC98 313 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 FRRS1LQ9P0K9 344 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.76□□□□□ -0.21
CLK3-210ENST00000563112 HHLA2Q9UM44 414 aa13.76□□□□□ -0.21
CLK3-210ENST00000563112 FADS2O95864 444 aaKnown RBP13.75□□□□□ -0.21
CLK3-210ENST00000563112 RPSAP08865 295 aaKnown RBP13.75□□□□□ -0.21
CLK3-210ENST00000563112 PIPP12273 146 aaPredicted RBP13.75□□□□□ -0.21
CLK3-210ENST00000563112 ATF1P18846 271 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 TGFBR2P37173 567 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 MTCP1P56278 107 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 LGALS4P56470 323 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 ERVFRD-1P60508 538 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 HCP5Q6MZN7 132 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 LHFPL2Q6ZUX7 228 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 PQLC1Q8N2U9 271 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 ZNF676Q8N7Q3 588 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 ZSCAN4Q8NAM6 433 aaPredicted RBP13.75□□□□□ -0.21
CLK3-210ENST00000563112 BEND2Q8NDZ0 799 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 RHOXF1Q8NHV9 184 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 WFDC12Q8WWY7 111 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 EMG1Q92979 244 aaKnown RBP13.75□□□□□ -0.21
CLK3-210ENST00000563112 RNF166Q96A37 237 aaPredicted RBP13.75□□□□□ -0.21
CLK3-210ENST00000563112 ADAT3Q96EY9 351 aaPredicted RBP13.75□□□□□ -0.21
CLK3-210ENST00000563112 C4orf36Q96KX1 117 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 AASSQ9UDR5 926 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 RNF114Q9Y508 228 aa13.75□□□□□ -0.21
CLK3-210ENST00000563112 LOC100130705A0A1B0GUX0 176 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 F8VVB4 439 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 F8VWA3 439 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 DBTP11182 482 aaKnown RBP13.74□□□□□ -0.21
CLK3-210ENST00000563112 CCL3L1P16619 93 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 GABRB1P18505 474 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 AZGP1P25311 298 aaKnown RBP13.74□□□□□ -0.21
CLK3-210ENST00000563112 POU3F4P49335 361 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 EDDM3BP56851 147 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 NANOS3P60323 173 aaKnown RBP13.74□□□□□ -0.21
CLK3-210ENST00000563112 ZNF91Q05481 1191 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 MRPL28Q13084 256 aaKnown RBP13.74□□□□□ -0.21
CLK3-210ENST00000563112 ALKBH1Q13686 389 aaKnown RBP13.74□□□□□ -0.21
CLK3-210ENST00000563112 GALEQ14376 348 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 BRICD5Q6PL45 260 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 LHFPL3Q86UP9 236 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 SYS1Q8N2H4 156 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 OR13C3Q8NGS6 347 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 SPSB1Q96BD6 273 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 PELI1Q96FA3 418 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 SNX22Q96L94 193 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 SLC29A1Q99808 456 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 ALG8Q9BVK2 526 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 INPP5EQ9NRR6 644 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 GLS2Q9UI32 602 aa13.74□□□□□ -0.21
CLK3-210ENST00000563112 ZNF737O75373 536 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 BAG2O95816 211 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 HAND1O96004 215 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 COX7A1P24310 79 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 PEX2P28328 305 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 RAB40BQ12829 278 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 ZNF273Q14593 569 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 KLHL22Q53GT1 634 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 OR8H2Q8N162 312 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 FAM58AQ8N1B3 248 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 C11orf42Q8N5U0 333 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 ZNF555Q8NEP9 628 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 LINC01006Q8NI28 216 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 STMN2Q93045 179 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 OPALINQ96PE5 141 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 SSX3Q99909 188 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 SEBOXQ9HB31 216 aaPredicted RBP13.73□□□□□ -0.21
CLK3-210ENST00000563112 AMBNQ9NP70 447 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 FAM118AQ9NWS6 357 aa13.73□□□□□ -0.21
CLK3-210ENST00000563112 RPL36Q9Y3U8 105 aaKnown RBP13.73□□□□□ -0.21
CLK3-210ENST00000563112 IGKV1-9A0A0C4DH69 117 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 TRBV2A0A0J9YWF9 115 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 OR4C45A6NMZ5 311 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 C17orf98A8MV24 154 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 H3BUX3 64 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 ZNF728P0DKX0 622 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 MEF2CQ06413 473 aaPredicted RBP13.72□□□□□ -0.21
CLK3-210ENST00000563112 AANATQ16613 207 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 LRRC75BQ2VPJ9 315 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 Q6ZSV7 163 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 PPP1R35Q8TAP8 253 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 MEGF9Q9H1U4 602 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 C16orf95Q9H693 158 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms