RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 LOC107986453A0A1B0GWG9 222 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 TMEM82A0PJX8 343 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 C17orf98A8MV24 154 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 ENTPD6O75354 484 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 GATBO75879 557 aaKnown RBP8.29□□□□□ -1.08
LDLR-214ENST00000560628 ARG1P05089 322 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 NPBWR2P48146 333 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 SNU13P55769 128 aaKnown RBP8.29□□□□□ -1.08
LDLR-214ENST00000560628 DLX6P56179 175 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 CDC42P60953 191 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 EDDM3AQ14507 147 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 OCLNQ16625 522 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 GDPD3Q7L5L3 318 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 FAM220AQ7Z4H9 259 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 C1QL4Q86Z23 238 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 DYNAPQ8N1N2 210 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 C11orf44Q8N8P7 122 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 OR2G2Q8NGZ5 317 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 PIFOQ8TCI5 191 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 RNF166Q96A37 237 aaPredicted RBP8.29□□□□□ -1.08
LDLR-214ENST00000560628 FGGYQ96C11 551 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 RNFT2Q96EX2 444 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 ADAT3Q96EY9 351 aaPredicted RBP8.29□□□□□ -1.08
LDLR-214ENST00000560628 BORCS8Q96FH0 119 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 NKX3-1Q99801 234 aaPredicted RBP8.29□□□□□ -1.08
LDLR-214ENST00000560628 CHST5Q9GZS9 411 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 IMPAD1Q9NX62 359 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 IL36RNQ9UBH0 155 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 AASSQ9UDR5 926 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 FOXJ3Q9UPW0 622 aa8.29□□□□□ -1.08
LDLR-214ENST00000560628 IGKV1-9A0A0C4DH69 117 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 DAPL1A0PJW8 107 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 FAM90A8PA6NJQ4 464 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 CHST1O43916 411 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 ZNF737O75373 536 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 HAND1O96004 215 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 IGHA1P01876 353 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 ZNF728P0DKX0 622 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 ATF1P18846 271 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 BCL3P20749 454 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 GABRR1P24046 479 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 KIR2DS4P43632 304 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 POU3F4P49335 361 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 ATP1B3P54709 279 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 MTCP1P56278 107 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 OR12D2P58182 307 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 ISL1P61371 349 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 DYNC1I2Q13409 638 aaKnown RBP8.28□□□□□ -1.08
LDLR-214ENST00000560628 TMED1Q13445 227 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 LDLRAD2Q5SZI1 272 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 CRIP3Q6Q6R5 217 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 TPRX1Q8N7U7 411 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 CCDC54Q8NEL0 328 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 OR52N4Q8NGI2 321 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 OR4C13Q8NGP0 309 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 EMG1Q92979 244 aaKnown RBP8.28□□□□□ -1.08
LDLR-214ENST00000560628 RFT1Q96AA3 541 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 SNX22Q96L94 193 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 CHST6Q9GZX3 395 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 RBFOX1Q9NWB1 397 aaKnown RBP8.28□□□□□ -1.08
LDLR-214ENST00000560628 FRRS1LQ9P0K9 344 aa8.28□□□□□ -1.08
LDLR-214ENST00000560628 MEGF11A6BM72 1044 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 J3QLW9 94 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 EI24O14681 340 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 ALPLP05186 524 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 CSF1P09603 554 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 UBCP0CG48 685 aaKnown RBP8.27□□□□□ -1.09
LDLR-214ENST00000560628 IGHV1-8P0DP01 117 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 VSIG10L2P0DP72 767 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 ZNF19P17023 458 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 ZNF20P17024 532 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 JUNBP17275 347 aaPredicted RBP8.27□□□□□ -1.09
LDLR-214ENST00000560628 PRKACAP17612 351 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 RBP2P50120 134 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 EFNB2P52799 333 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 NANOS3P60323 173 aaKnown RBP8.27□□□□□ -1.09
LDLR-214ENST00000560628 KPNB1Q14974 876 aaKnown RBP8.27□□□□□ -1.09
LDLR-214ENST00000560628 HERPUD1Q15011 391 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 CNN3Q15417 329 aaKnown RBP8.27□□□□□ -1.09
LDLR-214ENST00000560628 GRK1Q15835 563 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 FAM189A2Q15884 450 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 SSX2Q16385 188 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 AANATQ16613 207 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 TMEM244Q5VVB8 128 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 CCBE1Q6UXH8 406 aaPredicted RBP8.27□□□□□ -1.09
LDLR-214ENST00000560628 Q6ZTK2 550 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 TCF23Q7RTU1 214 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 RNF144BQ7Z419 303 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 TMEM219Q86XT9 240 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 OR8H2Q8N162 312 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 FAM58AQ8N1B3 248 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 OR4S1Q8NGB4 309 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 OR13D1Q8NGV5 346 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 OR10AC1Q8NH08 325 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 OR2T6Q8NHC8 308 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 TRUB1Q8WWH5 349 aaKnown RBP8.27□□□□□ -1.09
LDLR-214ENST00000560628 PP6455Q8WZ26 134 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 ORC6Q9Y5N6 252 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 MEGF8Q7Z7M0 2845 aa8.27□□□□□ -1.09
LDLR-214ENST00000560628 hADV38S2A0JD32 116 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms