RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 VBP1P61758 197 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 IL24Q13007 206 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 DCTN2Q13561 401 aaKnown RBP7.78□□□□□ -1.16
LDLR-211ENST00000560173 DOC2BQ14184 412 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 SPCS2Q15005 226 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 ATPAF1Q5TC12 328 aaPredicted RBP7.78□□□□□ -1.16
LDLR-211ENST00000560173 DUX4L9Q6RFH8 374 aaPredicted RBP7.78□□□□□ -1.16
LDLR-211ENST00000560173 ANGPTL5Q86XS5 388 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 CALHM1Q8IU99 346 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 PHC2Q8IXK0 858 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 FAM216BQ8N7L0 139 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 DNAAF1Q8NEP3 725 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 ANGPTL6Q8NI99 470 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 ZNF671Q8TAW3 534 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 DYNC2LI1Q8TCX1 351 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 GATAD2BQ8WXI9 593 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 SPSB1Q96BD6 273 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 SMIM19Q96E16 107 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 ZNF488Q96MN9 340 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 CCL13Q99616 98 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 WDR12Q9GZL7 423 aaKnown RBP7.78□□□□□ -1.16
LDLR-211ENST00000560173 DNTTIP1Q9H147 329 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 PLGRKTQ9HBL7 147 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 PALMDQ9NP74 551 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 SNTG1Q9NSN8 517 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 NLKQ9UBE8 527 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 DUX4Q9UBX2 424 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 ZNF222Q9UK12 451 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 POLDIP2Q9Y2S7 368 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 INSIG2Q9Y5U4 225 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 DOCK11Q5JSL3 2073 aa7.78□□□□□ -1.16
LDLR-211ENST00000560173 LOC105371242A0A075B767 164 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 NKX6-3A6NJ46 265 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 OR2AT4A6NND4 320 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 VGLL3A8MV65 326 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 DVL1O14640 695 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 TMPRSS2O15393 492 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 FSHBP01225 129 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 TFF1P04155 84 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 CD1AP06126 327 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 ACAA1P09110 424 aaPredicted RBP7.77□□□□□ -1.17
LDLR-211ENST00000560173 SELLP14151 372 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 PRKACBP22694 351 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 AZGP1P25311 298 aaKnown RBP7.77□□□□□ -1.17
LDLR-211ENST00000560173 FGF9P31371 208 aaPredicted RBP7.77□□□□□ -1.17
LDLR-211ENST00000560173 S100A5P33763 92 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 SRP14P37108 136 aaKnown RBP7.77□□□□□ -1.17
LDLR-211ENST00000560173 ERVK11-1P61568 191 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 PAX8Q06710 450 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 SMIM21Q3B7S5 101 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 DMKNQ6E0U4 476 aaPredicted RBP7.77□□□□□ -1.17
LDLR-211ENST00000560173 ACP7Q6ZNF0 438 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 ZNF788Q6ZQV5 615 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 SLC36A1Q7Z2H8 476 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 C1QL2Q7Z5L3 287 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 FGFRL1Q8N441 504 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 MS4A15Q8N5U1 240 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 PARP16Q8N5Y8 322 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 ZFP41Q8N8Y5 198 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 OR5T2Q8NGG2 359 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 OR13C9Q8NGT0 318 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 TSEN15Q8WW01 171 aaKnown RBP7.77□□□□□ -1.17
LDLR-211ENST00000560173 RAB40AQ8WXH6 277 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 THRSPQ92748 146 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 BORCS5Q969J3 196 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 BORCS8Q96FH0 119 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 KCTD7Q96MP8 289 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 GAFA1Q96PS6 74 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 CHCHD6Q9BRQ6 235 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 ZCCHC4Q9H5U6 513 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 C7orf69Q9H7B7 122 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 HES4Q9HCC6 221 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 EXOSC4Q9NPD3 245 aaKnown RBP7.77□□□□□ -1.17
LDLR-211ENST00000560173 RASL12Q9NYN1 266 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 DHDHQ9UQ10 334 aa7.77□□□□□ -1.17
LDLR-211ENST00000560173 IGKV1D-17A0A075B6S4 117 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 KIR2DS1A0A191URI9 304 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 PNMA8CA0A1B0GUJ8 204 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 TRDV1A0A1B0GX56 115 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 SIGLEC5O15389 551 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 ENSAO43768 121 aaKnown RBP7.76□□□□□ -1.17
LDLR-211ENST00000560173 ALX3O95076 343 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 NXPH2O95156 264 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 IL1AP01583 271 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 PSG2P11465 335 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 ADRA2CP18825 462 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 SOX2P48431 317 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 RBP2P50120 134 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 ATP1B3P54709 279 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 MTCP1P56278 107 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 NCS1P62166 190 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 LSM3P62310 102 aaKnown RBP7.76□□□□□ -1.17
LDLR-211ENST00000560173 IL13RA1P78552 427 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 ZNF846Q147U1 533 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 SSX1Q16384 188 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 C11orf91Q3C1V1 193 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 LIPKQ5VXJ0 399 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 CD276Q5ZPR3 534 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 ASPHD2Q6ICH7 369 aa7.76□□□□□ -1.17
LDLR-211ENST00000560173 ZNF529Q6P280 563 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms