RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 PNLIPRP3Q17RR3 467 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 PCGF3Q3KNV8 242 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 TBRG1Q3YBR2 411 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 ZFP69Q49AA0 526 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 KRTCAP3Q53RY4 240 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 RNASE12Q5GAN4 147 aaKnown RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 METTL11BQ5VVY1 283 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 OLFML2AQ68BL7 652 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 STEAP1BQ6NZ63 245 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 RPUSD3Q6P087 351 aaKnown RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 ASCL4Q6XD76 172 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 NUFIP2Q7Z417 695 aaKnown RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 LIX1LQ8IVB5 337 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 ZNF584Q8IVC4 421 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 GABRG1Q8N1C3 465 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 FTMTQ8N4E7 242 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 PAQR4Q8N4S7 273 aaPredicted RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 FAM89BQ8N5H3 189 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 CSNK2A3Q8NEV1 391 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 OR51T1Q8NGJ9 327 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 OR6F1Q8NGZ6 308 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 TNFAIP8L1Q8WVP5 186 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 AQP3Q92482 292 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 SLC7A6Q92536 515 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 PIGTQ969N2 578 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 SPSB4Q96A44 273 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 APOBEC3DQ96AK3 386 aaPredicted RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 RAB3CQ96E17 227 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 MRPS24Q96EL2 167 aaKnown RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 ALKBH3Q96Q83 286 aaPredicted RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 SLC25A21Q9BQT8 299 aaPredicted RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 TRAF4Q9BUZ4 470 aaPredicted RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 SELENOIQ9C0D9 397 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 ALX4Q9H161 411 aaPredicted RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 METTL9Q9H1A3 318 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 OR51J1Q9H342 316 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 TP63Q9H3D4 680 aaPredicted RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 GHITMQ9H3K2 345 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 OPA3Q9H6K4 179 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 GPN1Q9HCN4 374 aaPredicted RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 TUBG2Q9NRH3 451 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 PLSCR4Q9NRQ2 329 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 NUDT15Q9NV35 164 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 B3GNT2Q9NY97 397 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 ZNF224Q9NZL3 707 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 MRPL15Q9P015 296 aaKnown RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 SPRR3Q9UBC9 169 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 EIF3KQ9UBQ5 218 aaKnown RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 SCP2D1Q9UJQ7 156 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 PLEKHA6Q9Y2H5 1048 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 RHBDD3Q9Y3P4 386 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 ALG5Q9Y673 324 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 TDRD6O60522 2096 aaKnown RBP3.83□□□□□ -1.8
SRP54-212ENST00000556992 SPTBP11277 2137 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 RP1P56715 2156 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 ZNF462Q96JM2 2506 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 PIEZO2Q9H5I5 2752 aa3.83□□□□□ -1.8
SRP54-212ENST00000556992 IGKV2D-30A0A075B6S6 120 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 TRAV6A0A075B6T7 132 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 LOC100509620A0A075B734 347 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 NBPF19A0A087WUL8 3843 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 ZNF816-ZNF321PA0A0X1KG74 233 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 FAM230AA0A1W2PPH8 454 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 C5orf49A4QMS7 147 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 C5orf63A6NC05 138 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 PRSS29PA6NIE9 313 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 DISC1C4P0D8 188 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 MKRN2OSH3BPM6 223 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 TPD52L2O43399 206 aaKnown RBP3.82□□□□□ -1.8
SRP54-212ENST00000556992 AKR7A2O43488 359 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 SSNA1O43805 119 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 NXPH3O95157 252 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 RAB3DO95716 219 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 CST4P01036 141 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 CSTBP04080 98 aaKnown RBP3.82□□□□□ -1.8
SRP54-212ENST00000556992 CD74P04233 296 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 CD3DP04234 171 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 IFNA6P05013 189 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 CRHP06850 196 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 CCNOP22674 350 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 MPZP25189 248 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 ERP29P30040 261 aaKnown RBP3.82□□□□□ -1.8
SRP54-212ENST00000556992 AGTR1P30556 359 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 CCKARP32238 428 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 BTCP35070 178 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 APLNRP35414 380 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 OR3A4PP47883 348 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 VEGFCP49767 419 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 CCR6P51684 374 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 GNG2P59768 71 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 UBE2NP61088 152 aaKnown RBP3.82□□□□□ -1.8
SRP54-212ENST00000556992 RPS27AP62979 156 aaKnown RBP3.82□□□□□ -1.8
SRP54-212ENST00000556992 FAM3AP98173 230 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 ZNF92Q03936 586 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 SRSF6Q13247 344 aaKnown RBP3.82□□□□□ -1.8
SRP54-212ENST00000556992 MAB21L1Q13394 359 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 UNC119Q13432 240 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 P2RY6Q15077 328 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 ZMYND11Q15326 602 aa3.82□□□□□ -1.8
SRP54-212ENST00000556992 RSU1Q15404 277 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms