RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 RPS4Y2Q8TD47 263 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 CHIAQ9BZP6 476 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 SLITRK2Q9H156 845 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 DPAGT1Q9H3H5 408 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 ELL3Q9HB65 397 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 C19orf12Q9NSK7 152 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 AASSQ9UDR5 926 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 FAM181BA6NEQ2 426 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 WBP4O75554 376 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 BAG2O95816 211 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 CCDC159P0C7I6 412 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 ZNF20P17024 532 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 AZGP1P25311 298 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 CAPZA1P52907 286 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 ZNF146Q15072 292 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 HCP5Q6MZN7 132 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 SLC25A26Q70HW3 274 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 FAM185AQ8N0U4 392 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 C11orf42Q8N5U0 333 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 FGGYQ96C11 551 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 SF3B6Q9Y3B4 125 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 FAM96BQ9Y3D0 163 aa13.12□□□□□ -0.31
CCDC88C-209ENST00000554872 hCG_1809904A0A1W2PP81 198 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 A0A1W2PPE2 198 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 A0A1W2PR64 198 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 A0A1W2PRV1 198 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 IRGMA1A4Y4 181 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 F8VVB4 439 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 F8VWA3 439 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 ZFPL1O95159 310 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 CYB5AP00167 134 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 LIMS3P0CW19 117 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 LIMS4P0CW20 117 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 DCKP27707 260 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 SAA4P35542 130 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 CEBPDP49716 269 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 MTCP1P56278 107 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 AANATQ16613 207 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 CCDC58Q4VC31 144 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 SPIN3Q5JUX0 258 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 ZNF691Q5VV52 312 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 TTC23Q5W5X9 447 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 TMEM200BQ69YZ2 307 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 FIP1L1Q6UN15 594 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 LHFPL3Q86UP9 236 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 SAXO1Q8IYX7 474 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 OR8H2Q8N162 312 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 PARP16Q8N5Y8 322 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 ZNF676Q8N7Q3 588 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 OR51A4Q8NGJ6 313 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 OR13C3Q8NGS6 347 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 OR10AC1Q8NH08 325 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 OR4F5Q8NH21 305 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 SLAMF9Q96A28 289 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 OPALINQ96PE5 141 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 ISG20L2Q9H9L3 353 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 NEK6Q9HC98 313 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 C1RLQ9NZP8 487 aa13.11□□□□□ -0.31
CCDC88C-209ENST00000554872 C17orf98A8MV24 154 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 H0YAE9 185 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 H3BSH0 61 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 IGHV4-59P01825 116 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 GBX2P52951 348 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 DLX6P56179 175 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 COL10A1Q03692 680 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 MEF2CQ06413 473 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 PDZK1IP1Q13113 114 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 KLRD1Q13241 179 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 IL18R1Q13478 541 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 ZNF529Q6P280 563 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 GDPGP1Q6ZNW5 385 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 BEND2Q8NDZ0 799 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 OR5R1Q8NH85 324 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 SNX22Q96L94 193 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 COMMD4Q9H0A8 199 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 HEXA-AS1Q9H8Q6 139 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 AMBNQ9NP70 447 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 OR14J1Q9UGF5 321 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 VPREB3Q9UKI3 123 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 HSPE1-MOB4S4R3N1 261 aa13.1□□□□□ -0.31
CCDC88C-209ENST00000554872 CASQ2O14958 399 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 GPR137BO60478 399 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 CRYBA1P05813 215 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 RAG2P55895 527 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 ERVFRD-1P60508 538 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 RELBQ01201 579 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 CRIP3Q6Q6R5 217 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 C17orf107Q6ZR85 190 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 SERPINA12Q8IW75 414 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 PDZD9Q8IXQ8 264 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 FAM58AQ8N1B3 248 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 ZSCAN4Q8NAM6 433 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 SETD9Q8NE22 299 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 OR5D14Q8NGL3 314 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 OR5AK2Q8NH90 309 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 EMG1Q92979 244 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 MEGF9Q9H1U4 602 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 ZCCHC4Q9H5U6 513 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 ZNF696Q9H7X3 374 aa13.09□□□□□ -0.31
CCDC88C-209ENST00000554872 BEX1Q9HBH7 125 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms