RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 C20orf196Q8IYI0 205 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 SUMF1Q8NBK3 374 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 OR51T1Q8NGJ9 327 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 OR2AJ1Q8NGZ0 328 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 FNDC9Q8TBE3 224 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 TMEM171Q8WVE6 324 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 THRSPQ92748 146 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 TOMM40LQ969M1 308 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 SLC46A1Q96NT5 459 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 KCNK17Q96T54 332 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 VN1R1Q9GZP7 353 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 UNKLQ9H9P5 680 aaKnown RBP4.25□□□□□ -1.73
LIMA1-214ENST00000552783 SDHAF3Q9NRP4 125 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 HS3ST3A1Q9Y663 406 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 LHFPL6Q9Y693 200 aa4.25□□□□□ -1.73
LIMA1-214ENST00000552783 TPRP12270 2363 aaKnown RBP4.24□□□□□ -1.73
LIMA1-214ENST00000552783 FAM221BA6H8Z2 402 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 BTBD17A6NE02 478 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 FIGNL2A6NMB9 653 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 FOXI3A8MTJ6 420 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF724A8MTY0 619 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 SEC14L6B5MCN3 397 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 K7N7A8 449 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 IL18BPO95998 194 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 CD55P08174 381 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 RBMXP38159 391 aaKnown RBP4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF41P51814 821 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-214ENST00000552783 RUNX1Q01196 453 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PDCD1Q15116 288 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PRSS8Q16651 343 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PHLDA2Q53GA4 152 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 OPN5Q6U736 354 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 P4HA3Q7Z4N8 544 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PLXDC1Q8IUK5 500 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF283Q8N7M2 679 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF610Q8N9Z0 462 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 SUMF2Q8NBJ7 301 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 OR10AD1Q8NGE0 317 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 RHBDD1Q8TEB9 315 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ASB10Q8WXI3 467 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 GINS3Q9BRX5 216 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 CRLF2Q9HC73 371 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PPP4R1LQ9P1A2 415 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PADI1Q9ULC6 663 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 DNAJC13O75165 2243 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 DOCK7Q96N67 2140 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 RALGAPA1Q6GYQ0 2036 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 CCDC187A0A096LP49 1063 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 A0A1W2PNR3 127 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 FAM24AA6NFZ4 105 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 VSTM2BA6NLU5 285 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF814B7Z6K7 855 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF878C9JN71 531 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 RPL36A-HNRNPH2H7BZ11 118 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 TERTO14746 1132 aaKnown RBP4.24□□□□□ -1.73
LIMA1-214ENST00000552783 TNFSF12O43508 249 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 EFNA2O43921 213 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 DDAH2O95865 285 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ONECUT2O95948 504 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 GSTP1P09211 210 aaKnown RBP4.24□□□□□ -1.73
LIMA1-214ENST00000552783 SEC11BP0C7V7 166 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PET100P0DJ07 73 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PGA4P0DJD7 388 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PGA5P0DJD9 388 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 FOLR1P15328 257 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 IL2RGP31785 369 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 P2RY1P47900 373 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 CSNK1A1P48729 337 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 BIDP55957 195 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PIGPP57054 158 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF121P58317 390 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-214ENST00000552783 CLRN1P58418 232 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 FXYD4P59646 89 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 HSD11B2P80365 405 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 HMGN3Q15651 99 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 UBE2V2Q15819 145 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 NKAIN1Q4KMZ8 207 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF385CQ66K41 422 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-214ENST00000552783 OR2T2Q6IF00 324 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 Q6ZPA2 131 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 REC114Q7Z4M0 266 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ODF3L1Q8IXM7 274 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF721Q8TF20 911 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 TMEM234Q8WY98 164 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 SNX22Q96L94 193 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PECRQ9BY49 303 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF576Q9H609 170 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 LANCL2Q9NS86 450 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 GFOD1Q9NXC2 390 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 FOXD3Q9UJU5 478 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-214ENST00000552783 NXT1Q9UKK6 140 aaKnown RBP4.24□□□□□ -1.73
LIMA1-214ENST00000552783 B3GALT1Q9Y5Z6 326 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 PI4KAP42356 2102 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 ATG2AQ2TAZ0 1938 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 LOC400499M0QZD8 3231 aa4.24□□□□□ -1.73
LIMA1-214ENST00000552783 TRBV11-1A0A0K0K1C0 115 aa4.23□□□□□ -1.73
LIMA1-214ENST00000552783 OR5H15A6NDH6 313 aa4.23□□□□□ -1.73
LIMA1-214ENST00000552783 RBFOX3A6NFN3 312 aa4.23□□□□□ -1.73
LIMA1-214ENST00000552783 CRYM-AS1A6NIL9 109 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms