RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CALHM1Q8IU99 346 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 MAML2Q8IZL2 1156 aaPredicted RBP13.07□□□□□ -0.32
USP28-214ENST00000545540 TMEM123Q8N131 208 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 SPEM1Q8N4L4 309 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 Q96M66 194 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 ABHD14AQ9BUJ0 271 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 CRIM1Q9NZV1 1036 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 C19orf25Q9UFG5 118 aaPredicted RBP13.07□□□□□ -0.32
USP28-214ENST00000545540 M0R036 132 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 PHF1O43189 567 aaPredicted RBP13.06□□□□□ -0.32
USP28-214ENST00000545540 ARG1P05089 322 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 ZNF728P0DKX0 622 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 LIFP15018 202 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 CAV2P51636 162 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 IL15RAQ13261 267 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 ACTBL2Q562R1 376 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 NSUN5P2Q63ZY6 315 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 MRPL14Q6P1L8 145 aaKnown RBP13.06□□□□□ -0.32
USP28-214ENST00000545540 UQCC3Q6UW78 93 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 Q6ZPA2 131 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 ZNF442Q9H7R0 627 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 FANCFQ9NPI8 374 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 ETV2O00321 342 aaPredicted RBP13.06□□□□□ -0.32
USP28-214ENST00000545540 EIF3GO75821 320 aaKnown RBP eCLIP13.06□□□□□ -0.32
USP28-214ENST00000545540 DKK1O94907 266 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 SNAPINO95295 136 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 IFNA21P01568 189 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 OR13C7P0DN81 318 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 EIF1P41567 113 aaKnown RBP13.06□□□□□ -0.32
USP28-214ENST00000545540 SNRPEP62304 92 aaKnown RBP13.06□□□□□ -0.32
USP28-214ENST00000545540 SMCO1Q147U7 214 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 PEA15Q15121 130 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 KRBOX4Q5JUW0 171 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 LYSMD4Q5XG99 296 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 UBALD1Q8TB05 177 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 SCGB3A2Q96PL1 93 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 RSRP1Q9BUV0 290 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 PAPOLGQ9BWT3 736 aaKnown RBP13.06□□□□□ -0.32
USP28-214ENST00000545540 THBS4P35443 961 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 RAB13P51153 203 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 FLI1Q01543 452 aaPredicted RBP13.06□□□□□ -0.32
USP28-214ENST00000545540 CEACAM16Q2WEN9 425 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 SPIN3Q5JUX0 258 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 SAP25Q8TEE9 199 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 SPTSSAQ969W0 71 aa13.06□□□□□ -0.32
USP28-214ENST00000545540 NAA11Q9BSU3 229 aaPredicted RBP13.06□□□□□ -0.32
USP28-214ENST00000545540 COL5A1P20908 1838 aaPredicted RBP13.05□□□□□ -0.32
USP28-214ENST00000545540 IGHV1-45A0A0A0MS14 117 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 SERPINE3A8MV23 424 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 KLF7O75840 302 aaPredicted RBP13.05□□□□□ -0.32
USP28-214ENST00000545540 KLK3P07288 261 aaPredicted RBP13.05□□□□□ -0.32
USP28-214ENST00000545540 JMJD7P0C870 316 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 FOXG1P55316 489 aaPredicted RBP13.05□□□□□ -0.32
USP28-214ENST00000545540 KIRREL1Q96J84 757 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 METTL9Q9H1A3 318 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 ANAPC10Q9UM13 185 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 V9GYS6 101 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 CACNA1GO43497 2377 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 ZNF98A6NK75 572 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 GPR37O15354 613 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 FCGR3AP08637 254 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 COX6A1P12074 109 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 SSR4P51571 173 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 LSM6P62312 80 aaKnown RBP13.05□□□□□ -0.32
USP28-214ENST00000545540 HNF4GQ14541 408 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 PLCXD3Q63HM9 321 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 RAB11FIP2Q7L804 512 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 SLAMF9Q96A28 289 aa13.05□□□□□ -0.32
USP28-214ENST00000545540 DEDDO75618 318 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 NRASP01111 189 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 ZNF84P51523 738 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 CARD18P57730 90 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 PSG4Q00888 419 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 NAAAQ02083 359 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 RBMS3Q6XE24 437 aaKnown RBP13.04□□□□□ -0.32
USP28-214ENST00000545540 SLC25A26Q70HW3 274 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 TMEM217Q8N7C4 229 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 CD300LFQ8TDQ1 290 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 RNF138Q8WVD3 245 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 PRDM6Q9NQX0 595 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 SLC2A9Q9NRM0 540 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 ZFP57Q9NU63 452 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 ZNF175Q9Y473 711 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 NSG1A0A0A6YYJ2 146 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 TRAV39A0A0B4J263 110 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 LINC01387J3KSC0 135 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 TSPAN15O95858 294 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 PLA2G5P39877 138 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 CBX5P45973 191 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 IZUMO4Q1ZYL8 232 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 ZNF528Q3MIS6 628 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 CARFQ8N187 725 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 PP6455Q8WZ26 134 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 MEMO1Q9Y316 297 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 IGLV3-32A0A0A0MS00 114 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 A0A1W2PPE3 182 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 CEACAM18A8MTB9 384 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 CDRT15L2A8MXV6 281 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 NDUFA2O43678 99 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 RBP2P50120 134 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms