RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 HS3ST2Q9Y278 367 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 GJA4P35212 333 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 CLDN17P56750 224 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 IL13RA2Q14627 380 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 COX19Q49B96 90 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 C1orf100Q5SVJ3 147 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 C1orf140Q5VVS0 124 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 RABEPKQ7Z6M1 372 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 MCHR2Q969V1 340 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 PCGF1Q9BSM1 259 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 TRAPPC2LH3BP13 241 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 HCRTR1O43613 425 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 KLK2P20151 261 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 OTX2P32243 289 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 LPAR6P43657 344 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 RND2P52198 227 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 KIRREL2Q6UWL6 708 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 LANCL3Q6ZV70 420 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 MRPL21Q7Z2W9 205 aaKnown RBP4.8□□□□□ -1.64
PTPRD-213ENST00000537002 ZNF775Q96BV0 537 aaPredicted RBP4.8□□□□□ -1.64
PTPRD-213ENST00000537002 MRGPRX4Q96LA9 322 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 APOOQ9BUR5 198 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 PSENENQ9NZ42 101 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 APOBEC3BQ9UH17 382 aaKnown RBP4.8□□□□□ -1.64
PTPRD-213ENST00000537002 FAM166BA8MTA8 275 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 ZNF814B7Z6K7 855 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 USF1P22415 310 aaPredicted RBP4.8□□□□□ -1.64
PTPRD-213ENST00000537002 GABRA4P48169 554 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 HHEXQ03014 270 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 SSPNQ14714 243 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 DOK3Q7L591 496 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 BCORP1Q8N888 145 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 OR5C1Q8NGR4 320 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 DEFB126Q9BYW3 111 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 Q9N2K0 584 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 CYTL1Q9NRR1 136 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 HCFC1R1Q9NWW0 138 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 CTSVO60911 334 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 MMP23AO75900 390 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 MMP9P14780 707 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 THBS4P35443 961 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 ARR3P36575 388 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 KLF3P57682 345 aaPredicted RBP4.8□□□□□ -1.64
PTPRD-213ENST00000537002 MFAP5Q13361 173 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 AARDQ4LEZ3 155 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 TMEM240Q5SV17 173 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 TCTEX1D1Q8N7M0 179 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 TIMP4Q99727 224 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 GINS3Q9BRX5 216 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 WDR13Q9H1Z4 485 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 SRPK3Q9UPE1 567 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 ZFP30Q9Y2G7 519 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 PAM16Q9Y3D7 125 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 SLCO1B1Q9Y6L6 691 aa4.8□□□□□ -1.64
PTPRD-213ENST00000537002 UBE2L5PA0A1B0GUS4 154 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 PLRG1O43660 514 aaKnown RBP4.79□□□□□ -1.64
PTPRD-213ENST00000537002 RPS16P62249 146 aaKnown RBP4.79□□□□□ -1.64
PTPRD-213ENST00000537002 LCN2P80188 198 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 DMWDQ09019 674 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 CDKN3Q16667 212 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 AMER3Q8N944 861 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 OR10AD1Q8NGE0 317 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 OR52N5Q8NH56 324 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 PSMF1Q92530 271 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 FAM234AQ9H0X4 552 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 SRD5A3Q9H8P0 318 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 MTCL1Q9Y4B5 1905 aaKnown RBP4.79□□□□□ -1.64
PTPRD-213ENST00000537002 A0A0A6YYD5 115 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 BLACEA4D250 179 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 MAP1LC3B2A6NCE7 125 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 OR4C45A6NMZ5 311 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 MST1LQ2TV78 715 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 RNASEKQ6P5S7 137 aaKnown RBP4.79□□□□□ -1.64
PTPRD-213ENST00000537002 ARHGAP5-AS1Q96IT6 56 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 TPPP3Q9BW30 176 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 MAP1LC3BQ9GZQ8 125 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 C6orf106Q9H6K1 298 aaPredicted RBP4.79□□□□□ -1.64
PTPRD-213ENST00000537002 COLQQ9Y215 455 aaPredicted RBP4.79□□□□□ -1.64
PTPRD-213ENST00000537002 LRP12Q9Y561 859 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 GREB1Q4ZG55 1949 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 ZNF106Q9H2Y7 1883 aaKnown RBP4.79□□□□□ -1.64
PTPRD-213ENST00000537002 TRAF3IP2O43734 574 aaPredicted RBP4.79□□□□□ -1.64
PTPRD-213ENST00000537002 SLC35E2P0CK97 266 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 PGA4P0DJD7 388 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 PGA5P0DJD9 388 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 PRTGQ2VWP7 1150 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 C4orf45Q96LM5 186 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 UBE2ZQ9H832 354 aaPredicted RBP4.79□□□□□ -1.64
PTPRD-213ENST00000537002 P4HTMQ9NXG6 502 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 BET1LQ9NYM9 111 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 KLK13Q9UKR3 277 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 TRAPPC2LQ9UL33 140 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 SLC5A6Q9Y289 635 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 A0A0B4J2E0 115 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 A0A1B0GX12 115 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 C2orf72A6NCS6 295 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 CYB5R3P00387 301 aaPredicted RBP4.79□□□□□ -1.64
PTPRD-213ENST00000537002 CD82P27701 267 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 PAFAH1B2P68402 229 aa4.79□□□□□ -1.64
PTPRD-213ENST00000537002 SMAD4Q13485 552 aaKnown RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms