RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 METAP1DQ6UB28 335 aaPredicted RBP2.63□□□□□ -1.99
CD44-235ENST00000532339 BRD3OSQ6XYD6 125 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 SNX20Q7Z614 316 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 PPP1R27Q86WC6 154 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 PLCZ1Q86YW0 608 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 PSTKQ8IV42 348 aaKnown RBP2.63□□□□□ -1.99
CD44-235ENST00000532339 RDH10Q8IZV5 341 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 OR8K1Q8NGG5 319 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 OR1L6Q8NGR2 347 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 KCNG3Q8TAE7 436 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 YIPF5Q969M3 257 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 IMP4Q96G21 291 aaKnown RBP2.63□□□□□ -1.99
CD44-235ENST00000532339 PGLYRP4Q96LB8 373 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 PRAP1Q96NZ9 151 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 PANX2Q96RD6 677 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 OSBPL11Q9BXB4 747 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 TPK1Q9H3S4 243 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 NIPAL2Q9H841 368 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 VNN3Q9NY84 501 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 TAC3Q9UHF0 121 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 DKKL1Q9UK85 242 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 SIGLEC9Q9Y336 463 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 RPL36Q9Y3U8 105 aaKnown RBP2.63□□□□□ -1.99
CD44-235ENST00000532339 PEX16Q9Y5Y5 336 aa2.63□□□□□ -1.99
CD44-235ENST00000532339 E9PBE3 544 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 ICOSLGO75144 302 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 C1orf105O95561 183 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 ETHE1O95571 254 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 OXSR1O95747 527 aaPredicted RBP2.62□□□□□ -1.99
CD44-235ENST00000532339 LGI1O95970 557 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 CST1P01037 141 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 OR12D1P0DN82 309 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 ERGP11308 486 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 NTSP30990 170 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 SSR1P43307 286 aaKnown RBP2.62□□□□□ -1.99
CD44-235ENST00000532339 CRYBB2P43320 205 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 OR3A4PP47883 348 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 FOXA1P55317 472 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 PLP1P60201 277 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 IGLV3-21P80748 117 aaPredicted RBP2.62□□□□□ -1.99
CD44-235ENST00000532339 ARL6IP1Q15041 203 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 KIAA0040Q15053 153 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 OXA1LQ15070 435 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 DGUOKQ16854 277 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 CCSMST1Q4G0I0 132 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 ZNF658Q5TYW1 1059 aaPredicted RBP2.62□□□□□ -1.99
CD44-235ENST00000532339 RAET1LQ5VY80 246 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 PRR22Q8IZ63 422 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 ZNF101Q8IZC7 436 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 CA13Q8N1Q1 262 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 OR10H4Q8NGA5 316 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 OR4K14Q8NGD5 310 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 BLOC1S5Q8TDH9 187 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 RAB8BQ92930 207 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 SEC22AQ96IW7 307 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 CNN2Q99439 309 aaKnown RBP2.62□□□□□ -1.99
CD44-235ENST00000532339 SNRNP25Q9BV90 132 aaKnown RBP2.62□□□□□ -1.99
CD44-235ENST00000532339 C1QTNF6Q9BXI9 259 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 PPA2Q9H2U2 334 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 ZNF442Q9H7R0 627 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 THUMPD1Q9NXG2 353 aaKnown RBP2.62□□□□□ -1.99
CD44-235ENST00000532339 SLC2A8Q9NY64 477 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 DCDC2Q9UHG0 476 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 VPREB3Q9UKI3 123 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 ABCG2Q9UNQ0 655 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 KCNIP3Q9Y2W7 256 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 ZNF337Q9Y3M9 751 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 CSDC2Q9Y534 153 aaKnown RBP2.62□□□□□ -1.99
CD44-235ENST00000532339 PKHD1L1Q86WI1 4243 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 ARHGAP32A7KAX9 2087 aa2.62□□□□□ -1.99
CD44-235ENST00000532339 HEATR5BQ9P2D3 2071 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 LOC285095A0A1B0GVY8 99 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 CIB4A0PJX0 185 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 LOC110117498-PIK3R3F6TDL0 507 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 M0R233 179 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 CTNSO60931 367 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 NIPSNAP2O75323 286 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 TMEM50AO95807 157 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 AIFM1O95831 613 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 HSPB1P04792 205 aaKnown RBP2.61□□□□□ -1.99
CD44-235ENST00000532339 IFNA6P05013 189 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 CT62P0C5K7 136 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 OR56A5P0C7T3 313 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 MGMTP16455 207 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 CNTFRP26992 372 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 HSD17B2P37059 387 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 KLK7P49862 253 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 DSCR4P56555 118 aaPredicted RBP2.61□□□□□ -1.99
CD44-235ENST00000532339 SCRN3Q0VDG4 424 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 STX4Q12846 297 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 MRPL28Q13084 256 aaKnown RBP2.61□□□□□ -1.99
CD44-235ENST00000532339 OR5I1Q13606 314 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 ARHGAP19Q14CB8 494 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 EBPQ15125 230 aaKnown RBP2.61□□□□□ -1.99
CD44-235ENST00000532339 ZNF79Q15937 498 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 ANKRD22Q5VYY1 191 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 RNASEKQ6P5S7 137 aaKnown RBP2.61□□□□□ -1.99
CD44-235ENST00000532339 LRRN1Q6UXK5 716 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 HSD17B13Q7Z5P4 300 aaPredicted RBP2.61□□□□□ -1.99
CD44-235ENST00000532339 GALNT10Q86SR1 603 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms