RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 MRM2Q9UI43 246 aaKnown RBP9.17□□□□□ -0.94
VPS28-214ENST00000531032 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.17□□□□□ -0.943e-6■□□□□ 9.1
VPS28-214ENST00000531032 OAZ3Q9UMX2 235 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 SNX5Q9Y5X3 404 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 A6NDX4 124 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 A6NIN4 97 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 FBXO24O75426 580 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 ARG1P05089 322 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 ZNF728P0DKX0 622 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 ATP6V1E1P36543 226 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 DYNLT3P51808 116 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 COL10A1Q03692 680 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 HABP2Q14520 560 aaPredicted RBP9.16□□□□□ -0.94
VPS28-214ENST00000531032 CNN3Q15417 329 aaKnown RBP9.16□□□□□ -0.94
VPS28-214ENST00000531032 LDLRAD2Q5SZI1 272 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 Q6ZPA2 131 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 REC114Q7Z4M0 266 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 ANGPTL5Q86XS5 388 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 ASCC1Q8N9N2 400 aaKnown RBP9.16□□□□□ -0.94
VPS28-214ENST00000531032 OR11H6Q8NGC7 330 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 OR13D1Q8NGV5 346 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 RPS4Y2Q8TD47 263 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 MALSU1Q96EH3 234 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 CLN6Q9NWW5 311 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 IMPAD1Q9NX62 359 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 SLC22A13Q9Y226 551 aa9.16□□□□□ -0.94
VPS28-214ENST00000531032 ADARB2-AS1A8MUL3 147 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 XPNPEP2O43895 674 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 PRB2P02812 416 aaPredicted RBP9.15□□□□□ -0.94
VPS28-214ENST00000531032 CHRM2P08172 466 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 IGHV1-8P0DP01 117 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 CD28P10747 220 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 EPHA2P29317 976 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 RAB13P51153 203 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 CDC42P60953 191 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 KPNB1Q14974 876 aaKnown RBP9.15□□□□□ -0.94
VPS28-214ENST00000531032 FAM189A2Q15884 450 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 SSX2Q16385 188 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 PLA1AQ53H76 456 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 ZFP1Q6P2D0 407 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 TCF23Q7RTU1 214 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 TMEM219Q86XT9 240 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 NDUFA11Q86Y39 141 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 OR8H2Q8N162 312 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 LYG1Q8N1E2 194 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 OR4S1Q8NGB4 309 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 TRMT10AQ8TBZ6 339 aaKnown RBP9.15□□□□□ -0.94
VPS28-214ENST00000531032 CEP19Q96LK0 163 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 TBX5Q99593 518 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 GABARAPL3Q9BY60 117 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 WNT10AQ9GZT5 417 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 ABCB10Q9NRK6 738 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 MTCH1Q9NZJ7 389 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 PITPNC1Q9UKF7 332 aa9.15□□□□□ -0.94
VPS28-214ENST00000531032 NOTCH3Q9UM47 2321 aa9.15□□□□□ -0.95
VPS28-214ENST00000531032 IGKV1-27A0A075B6S5 117 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 FAM230AA0A1W2PPH8 454 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 F8VVB4 439 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 F8VWA3 439 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 PIN1P1O15428 100 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 KRT8P05787 483 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 EDDM3BP56851 147 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 EMX1Q04741 257 aaPredicted RBP9.14□□□□□ -0.95
VPS28-214ENST00000531032 MEF2CQ06413 473 aaPredicted RBP9.14□□□□□ -0.95
VPS28-214ENST00000531032 UBE2V2Q15819 145 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 NSUN5P1Q3KNT7 163 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 GDPD3Q7L5L3 318 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 SSX6Q7RTT6 188 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 FAM220AQ7Z4H9 259 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 C10orf67Q8IYJ2 551 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 YIPF7Q8N8F6 280 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 OR10H4Q8NGA5 316 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 RFKQ969G6 155 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 SNX22Q96L94 193 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 ZNF714Q96N38 554 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 OSBPL10Q9BXB5 764 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 PRSS22Q9GZN4 317 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 CHST5Q9GZS9 411 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 MMP28Q9H239 520 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 PLEKHA1Q9HB21 404 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 SEBOXQ9HB31 216 aaPredicted RBP9.14□□□□□ -0.95
VPS28-214ENST00000531032 WARS2Q9UGM6 360 aaKnown RBP9.14□□□□□ -0.95
VPS28-214ENST00000531032 SLC7A11Q9UPY5 501 aa9.14□□□□□ -0.95
VPS28-214ENST00000531032 TMEM82A0PJX8 343 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 MEX3AA1L020 520 aaKnown RBP9.13□□□□□ -0.95
VPS28-214ENST00000531032 EBAG9O00559 213 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 EI24O14681 340 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 GATBO75879 557 aaKnown RBP9.13□□□□□ -0.95
VPS28-214ENST00000531032 RPP14O95059 124 aaKnown RBP9.13□□□□□ -0.95
VPS28-214ENST00000531032 APOL3O95236 402 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 HTR1FP30939 366 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 OXLD1Q5BKU9 147 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 MINOS1Q5TGZ0 78 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 SLC25A26Q70HW3 274 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 CATSPERDQ86XM0 798 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 CCDC54Q8NEL0 328 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 OR4F17Q8NGA8 305 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 OR8J1Q8NGP2 316 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 SLAMF9Q96A28 289 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 R3HDM4Q96D70 268 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms