RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 IGKV1D-17A0A075B6S4 117 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 LOC100506127A0A0U1RQW1 187 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 A0A1B0GW55 424 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 OR2AT4A6NND4 320 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 F5H0A9 414 aaPredicted RBP11.68□□□□□ -0.54
USF1-209ENST00000529476 ADAM20O43506 726 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 CDRT1O95170 752 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 HEXAP06865 529 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 INHBBP09529 407 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 DUX4L2P0CJ85 424 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 DUX4L3P0CJ86 424 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 DUX4L4P0CJ87 422 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 DUX4L5P0CJ88 424 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 DUX4L6P0CJ89 424 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 DUX4L7P0CJ90 424 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 IGHV4-31P0DP07 118 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 PSG2P11465 335 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 RPS2P15880 293 aaKnown RBP11.68□□□□□ -0.54
USF1-209ENST00000529476 FGF9P31371 208 aaPredicted RBP11.68□□□□□ -0.54
USF1-209ENST00000529476 DUX4L9Q6RFH8 374 aaPredicted RBP11.68□□□□□ -0.54
USF1-209ENST00000529476 CLEC9AQ6UXN8 241 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 ASCL4Q6XD76 172 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 CDH26Q8IXH8 852 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 PNLDC1Q8NA58 520 aaKnown RBP11.68□□□□□ -0.54
USF1-209ENST00000529476 PXT1Q8NFP0 134 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 OR4D6Q8NGJ1 314 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 OR13F1Q8NGS4 319 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 OR10K1Q8NGX5 313 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 EMG1Q92979 244 aaKnown RBP11.68□□□□□ -0.54
USF1-209ENST00000529476 RAB39BQ96DA2 213 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 RNF167Q9H6Y7 350 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 ELL3Q9HB65 397 aaPredicted RBP11.68□□□□□ -0.54
USF1-209ENST00000529476 IL36RNQ9UBH0 155 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 CTSZQ9UBR2 303 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 DUX4Q9UBX2 424 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 MIOXQ9UGB7 285 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 ING4Q9UNL4 249 aa11.68□□□□□ -0.54
USF1-209ENST00000529476 AK6Q9Y3D8 172 aaKnown RBP11.68□□□□□ -0.54
USF1-209ENST00000529476 FBN1P35555 2871 aaKnown RBP11.68□□□□□ -0.54
USF1-209ENST00000529476 TRAV1-2A0A0B4J238 106 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 RFPL4AA6NLU0 287 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 RFPL4AL1F8VTS6 287 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 NDUFA2O43678 99 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 TFAP2AP05549 437 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 PRKACAP17612 351 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 MYL9P24844 172 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 GABRA2P47869 451 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 ALDH3B2P48448 385 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 CEBPDP49716 269 aaPredicted RBP11.67□□□□□ -0.54
USF1-209ENST00000529476 SNU13P55769 128 aaKnown RBP11.67□□□□□ -0.54
USF1-209ENST00000529476 GLT8D1Q68CQ7 371 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 Q8IYB0 196 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 FAM58AQ8N1B3 248 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 CD177Q8N6Q3 437 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 FAM216BQ8N7L0 139 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 OR8B3Q8NGG8 313 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 ANGPTL6Q8NI99 470 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 NEIL1Q96FI4 390 aaPredicted RBP11.67□□□□□ -0.54
USF1-209ENST00000529476 C1orf159Q96HA4 380 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 OR8B2Q96RD0 313 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 CENPOQ9BU64 300 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 LPAR2Q9HBW0 351 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 OR14J1Q9UGF5 321 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 ZNF222Q9UK12 451 aa11.67□□□□□ -0.54
USF1-209ENST00000529476 MRPS28Q9Y2Q9 187 aaKnown RBP11.67□□□□□ -0.54
USF1-209ENST00000529476 ARHGAP32A7KAX9 2087 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 DOCK11Q5JSL3 2073 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 COL6A5A8TX70 2615 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 NKX6-3A6NJ46 265 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 TMPRSS2O15393 492 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 PHF1O43189 567 aaPredicted RBP11.66□□□□□ -0.54
USF1-209ENST00000529476 FCN3O75636 299 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 HTR3BO95264 441 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 KNG1P01042 644 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 CD37P11049 281 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 SELLP14151 372 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 PRDX2P32119 198 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 PITPNBP48739 271 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 KRTAP1-1Q07627 177 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 RSU1Q15404 277 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 C1orf100Q5SVJ3 147 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 ATPAF1Q5TC12 328 aaPredicted RBP11.66□□□□□ -0.54
USF1-209ENST00000529476 AWAT2Q6E213 333 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 GLIPR1L1Q6UWM5 242 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 ZNF788Q6ZQV5 615 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 NLRC3Q7RTR2 1065 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 FOXRED1Q96CU9 486 aaPredicted RBP11.66□□□□□ -0.54
USF1-209ENST00000529476 MSI2Q96DH6 328 aaKnown RBP11.66□□□□□ -0.54
USF1-209ENST00000529476 GAFA1Q96PS6 74 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 S100A13Q99584 98 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 UQCC2Q9BRT2 126 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 FUNDC2Q9BWH2 189 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 METTL9Q9H1A3 318 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 HMG20AQ9NP66 347 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 KAAG1Q9UBP8 84 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 METRNQ9UJH8 293 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 GSTK1Q9Y2Q3 226 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 ZANQ9Y493 2812 aa11.66□□□□□ -0.54
USF1-209ENST00000529476 ABCA1O95477 2261 aa11.65□□□□□ -0.54
USF1-209ENST00000529476 SMIM30A4D0T7 59 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms