RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 HAAOP46952 286 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 GPM6AP51674 278 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 ART1P52961 327 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 OR10A3P58181 314 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 SNRPD2P62316 118 aaKnown RBP6.25□□□□□ -1.41
CD44-228ENST00000528455 TNFAIP6P98066 277 aaPredicted RBP6.25□□□□□ -1.41
CD44-228ENST00000528455 IL24Q13007 206 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 CNPY1Q3B7I2 92 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 CD276Q5ZPR3 534 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 C11orf71Q6IPW1 123 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 SFXN4Q6P4A7 337 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 MZT2AQ6P582 158 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 C11orf53Q8IXP5 236 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 JAGN1Q8N5M9 183 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 SCCPDHQ8NBX0 429 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 OR10Z1Q8NGY1 313 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 OR51F2Q8NH61 342 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 TBC1D15Q8TC07 691 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 HPSE2Q8WWQ2 592 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 NEU4Q8WWR8 484 aaPredicted RBP6.25□□□□□ -1.41
CD44-228ENST00000528455 NRGNQ92686 78 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 PTX4Q96A99 478 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 ELMOD3Q96FG2 381 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 S100A13Q99584 98 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 ADAT1Q9BUB4 502 aaKnown RBP6.25□□□□□ -1.41
CD44-228ENST00000528455 TRAF4Q9BUZ4 470 aaPredicted RBP6.25□□□□□ -1.41
CD44-228ENST00000528455 SLIRPQ9GZT3 109 aaKnown RBP6.25□□□□□ -1.41
CD44-228ENST00000528455 RAB1BQ9H0U4 201 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 PLGRKTQ9HBL7 147 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 DECR2Q9NUI1 292 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 RASL12Q9NYN1 266 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 CCDC59Q9P031 241 aaKnown RBP6.25□□□□□ -1.41
CD44-228ENST00000528455 SPATA2Q9UM82 520 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 ITPR3Q14573 2671 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 F8P00451 2351 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 ZSCAN5BA6NJL1 495 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 H3BUI4 141 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 H7C417 338 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 SPRY3O43610 288 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 FSTL3O95633 263 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 LHBP01229 141 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 GRPP07492 148 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 TMEM225BP0DP42 221 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 DNASE1P24855 282 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 BMXP51813 675 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 CAV3P56539 151 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 ZP1P60852 638 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 MRPS11P82912 194 aaKnown RBP6.24□□□□□ -1.41
CD44-228ENST00000528455 QRFPP83859 136 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 RAB11BQ15907 218 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 ZNF181Q2M3W8 571 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 ZNF404Q494X3 552 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 DMRTC1Q5HYR2 192 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 IDNKQ5T6J7 187 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 ELP2Q6IA86 826 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 OR2W3Q7Z3T1 314 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 C1QL2Q7Z5L3 287 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 CALHM1Q8IU99 346 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 Q8IYB0 196 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 OR51D1Q8NGF3 324 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 OR4D6Q8NGJ1 314 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 KCNG3Q8TAE7 436 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 TRMT10AQ8TBZ6 339 aaKnown RBP6.24□□□□□ -1.41
CD44-228ENST00000528455 IGFBPL1Q8WX77 278 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 AQP3Q92482 292 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 FAM3DQ96BQ1 224 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 SPACA5Q96QH8 159 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 OR2V2Q96R30 315 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 FGF23Q9GZV9 251 aaPredicted RBP6.24□□□□□ -1.41
CD44-228ENST00000528455 METTL9Q9H1A3 318 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 FN3KRPQ9HA64 309 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 SEBOXQ9HB31 216 aaPredicted RBP6.24□□□□□ -1.41
CD44-228ENST00000528455 DYNLRB1Q9NP97 96 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 IL36GQ9NZH8 169 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 DAPK2Q9UIK4 370 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 RAB22AQ9UL26 194 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 ING4Q9UNL4 249 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 LAMP3Q9UQV4 416 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 POLDIP2Q9Y2S7 368 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 ETV7Q9Y603 341 aa6.24□□□□□ -1.41
CD44-228ENST00000528455 TRAPPC2LH3BP13 241 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 CDIPTO14735 213 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 LDLRAD4O15165 306 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 AKR7A2O43488 359 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 NCR1O76036 304 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 TPPPO94811 219 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 KDM4BO94953 1096 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 CSTBP04080 98 aaKnown RBP6.23□□□□□ -1.41
CD44-228ENST00000528455 SOD3P08294 240 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 SLC2A2P11168 524 aaPredicted RBP6.23□□□□□ -1.41
CD44-228ENST00000528455 ERVK11-1P61568 191 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 CCL8P80075 99 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 ZNF154Q13106 437 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 HNRNPA0Q13151 305 aaKnown RBP6.23□□□□□ -1.41
CD44-228ENST00000528455 RSU1Q15404 277 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 HES5Q5TA89 166 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 HAGHLQ6PII5 290 aaPredicted RBP6.23□□□□□ -1.41
CD44-228ENST00000528455 GLIPR1L1Q6UWM5 242 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 SLC25A26Q70HW3 274 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 RNF144BQ7Z419 303 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms