RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 FOXRED2Q8IWF2 684 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 CLRN3Q8NCR9 226 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 SPSB4Q96A44 273 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 LOXL2Q9Y4K0 774 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 PMELP40967 661 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 MALLQ13021 153 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 PIGYQ3MUY2 71 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 PLCXD3Q63HM9 321 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 RPL7L1Q6DKI1 246 aaKnown RBP18.4■□□□□ 0.54
VPS28-205ENST00000526204 FGFBP3Q8TAT2 258 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 AIFM2Q9BRQ8 373 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 PRDM14Q9GZV8 571 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 LIME1Q9H400 295 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 NAA60Q9H7X0 242 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 ZNF286AQ9HBT8 521 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 ATPIF1Q9UII2 106 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 BOKQ9UMX3 212 aaPredicted RBP18.4■□□□□ 0.54
VPS28-205ENST00000526204 PDCD6O75340 191 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 JTBO76095 146 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 GAPDHP04406 335 aaKnown RBP18.4■□□□□ 0.54
VPS28-205ENST00000526204 PABPC1L2AQ5JQF8 200 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 DEFB123Q8N688 67 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 RTN4IP1Q8WWV3 396 aaPredicted RBP18.4■□□□□ 0.54
VPS28-205ENST00000526204 TOMM40LQ969M1 308 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 PRRX2Q99811 253 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 SUCNR1Q9BXA5 334 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 C1QTNF5Q9BXJ0 243 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 PLEKHA2Q9HB19 425 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 P4HTMQ9NXG6 502 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 ZNF581Q9P0T4 197 aa18.4■□□□□ 0.54
VPS28-205ENST00000526204 CARHSP1Q9Y2V2 147 aaKnown RBP18.4■□□□□ 0.54
VPS28-205ENST00000526204 FAM74A7A6NL05 159 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 MMP7P09237 267 aaPredicted RBP18.39■□□□□ 0.53
VPS28-205ENST00000526204 AKR1C2P52895 323 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 PRSS12P56730 875 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 AKR1C1Q04828 323 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 MST1LQ2TV78 715 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 FAM74A3Q4VXF1 159 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 LRTM2Q8N967 370 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 ABHD3Q8WU67 409 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 SLC39A7Q92504 469 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 PIGCQ92535 297 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 MRPL24Q96A35 216 aaKnown RBP18.39■□□□□ 0.53
VPS28-205ENST00000526204 PURGQ9UJV8 347 aaKnown RBP18.39■□□□□ 0.53
VPS28-205ENST00000526204 VPS13AQ96RL7 3174 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 SDK2Q58EX2 2172 aa18.39■□□□□ 0.53
VPS28-205ENST00000526204 TPD52L2O43399 206 aaKnown RBP18.38■□□□□ 0.53
VPS28-205ENST00000526204 UCP3P55916 312 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 FOXO1Q12778 655 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 C1orf210Q8IVY1 113 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 FAM219AQ8IW50 185 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 SYT3Q9BQG1 590 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 ATP6V1G2-DDX39BF2Z307 99 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 F8W036 122 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 LRP3O75074 770 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 BLOC1S1P78537 153 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 SPEM2Q0P670 501 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 TMEM187Q14656 261 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 TMEM211Q6ICI0 200 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 SLC22A25Q6T423 547 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 TIPARPQ7Z3E1 657 aaKnown RBP18.38■□□□□ 0.53
VPS28-205ENST00000526204 PUSL1Q8N0Z8 303 aaKnown RBP18.38■□□□□ 0.53
VPS28-205ENST00000526204 OR4A4PQ8NGN8 299 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 ZNF845Q96IR2 970 aaPredicted RBP18.38■□□□□ 0.53
VPS28-205ENST00000526204 TREM1Q9NP99 234 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 ZFP57Q9NU63 452 aa18.38■□□□□ 0.53
VPS28-205ENST00000526204 NOSIPQ9Y314 301 aaKnown RBP18.38■□□□□ 0.53
VPS28-205ENST00000526204 IGKV3D-15A0A087WSY6 115 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 GPR31O00270 319 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 MRPL33O75394 65 aaKnown RBP18.37■□□□□ 0.53
VPS28-205ENST00000526204 ADCYAP1P18509 176 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 FUT3P21217 361 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 FCGR2CP31995 323 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 RBM11P57052 281 aaKnown RBP18.37■□□□□ 0.53
VPS28-205ENST00000526204 OR2A2Q6IF42 318 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 PSMF1Q92530 271 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 SEC11CQ9BY50 192 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 LINC00470Q9BZP3 86 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 STRADBQ9C0K7 418 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 PARPBPQ9NWS1 579 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 PRELID1Q9Y255 219 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 MYO7BQ6PIF6 2116 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 RTTNQ86VV8 2226 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 PINLYPA6NC86 204 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 EDN3P14138 238 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 GLP1RP43220 463 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 SULT1A2P50226 295 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 CAV2P51636 162 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 TMEM268Q5VZI3 342 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 COLCA1Q6ZS62 124 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 TAAR9Q96RI9 348 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 HRH4Q9H3N8 390 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 UQCC1Q9NVA1 299 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 LRFN1Q9P244 771 aa18.37■□□□□ 0.53
VPS28-205ENST00000526204 E5RGE8 158 aa18.36■□□□□ 0.53
VPS28-205ENST00000526204 OR5AC1P0C628 307 aa18.36■□□□□ 0.53
VPS28-205ENST00000526204 TSPO2Q5TGU0 170 aa18.36■□□□□ 0.53
VPS28-205ENST00000526204 SPAG16Q8N0X2 631 aa18.36■□□□□ 0.53
VPS28-205ENST00000526204 MOB3AQ96BX8 217 aa18.36■□□□□ 0.53
VPS28-205ENST00000526204 MARS2Q96GW9 593 aaKnown RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms