RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 RNF133Q8WVZ7 376 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 PGLYRP3Q96LB9 341 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 PECRQ9BY49 303 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 NAA60Q9H7X0 242 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 MMP26Q9NRE1 261 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 LAMP3Q9UQV4 416 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 DOCK6Q96HP0 2047 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 AQP7P3A6NL99 342 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 LRRC30A6NM36 301 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 OR7C2O60412 319 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 NGFRP08138 427 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 CCL3P10147 92 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 SELEP16581 610 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 ZNF92Q03936 586 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 DEFB109BQ30KR1 87 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 DCAF12L2Q5VW00 463 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 SPINK14Q6IE38 97 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 PROCRQ9UNN8 238 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 MRPS18BQ9Y676 258 aaKnown RBP11.2□□□□□ -0.62
USP53-209ENST00000514665 ARID2Q68CP9 1835 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 CASP8AP2Q9UKL3 1982 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 A0A1W2PP11 408 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 SHISA3A0PJX4 238 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 F6UZH7 168 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 M0R1B8 84 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 IL9P15248 144 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 IL11P20809 199 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 RAC3P60763 192 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 TMEM267Q0VDI3 215 aaPredicted RBP11.2□□□□□ -0.62
USP53-209ENST00000514665 HES1Q14469 280 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 ZNF528Q3MIS6 628 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 FAM58AQ8N1B3 248 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 ADAD2Q8NCV1 583 aaKnown RBP11.2□□□□□ -0.62
USP53-209ENST00000514665 TMEM104Q8NE00 496 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 CLDN23Q96B33 292 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 BSCL2Q96G97 398 aaPredicted RBP11.2□□□□□ -0.62
USP53-209ENST00000514665 TRAF4Q9BUZ4 470 aaPredicted RBP11.2□□□□□ -0.62
USP53-209ENST00000514665 BTBD17A6NE02 478 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 NKX6-3A6NJ46 265 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 NGFP01138 241 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 METTL15P1P0C7V9 234 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 VSIG10L2P0DP72 767 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 ZBTB25P24278 435 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 ENDOGQ14249 297 aaKnown RBP11.19□□□□□ -0.62
USP53-209ENST00000514665 HSD17B13Q7Z5P4 300 aaPredicted RBP11.19□□□□□ -0.62
USP53-209ENST00000514665 PINX1Q96BK5 328 aaKnown RBP11.19□□□□□ -0.62
USP53-209ENST00000514665 EDEM2Q9BV94 578 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 ZNF355PQ9NSJ1 428 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 MTCH1Q9NZJ7 389 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 V9GYS6 101 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 BRWD3Q6RI45 1802 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 ATRXP46100 2492 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 GEMIN2O14893 280 aaKnown RBP11.19□□□□□ -0.62
USP53-209ENST00000514665 PNPP00491 289 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 APOA2P02652 100 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 SRD5A2P31213 254 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 CBLN2Q8IUK8 224 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 CARFQ8N187 725 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 BVESQ8NE79 360 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 OR13D1Q8NGV5 346 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 PIK3IP1Q96FE7 263 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 SARGQ9BW04 601 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 WNK2Q9Y3S1 2297 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 C17orf51A8MQB3 221 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 DEFB108AA8MXU0 73 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 PIN1P1O15428 100 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 IGHV3-13P01766 116 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 IGHV3-7P01780 117 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 TMEM11P17152 192 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 SNRPEP62304 92 aaKnown RBP11.19□□□□□ -0.62
USP53-209ENST00000514665 TUSC1Q2TAM9 212 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 NCR3LG1Q68D85 454 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 WFDC8Q8IUA0 241 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 ZNF721Q8TF20 911 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 PHYHIPLQ96FC7 376 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 BTF3L4Q96K17 158 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 TAAR9Q96RI9 348 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 FZR1Q9UM11 496 aa11.19□□□□□ -0.62
USP53-209ENST00000514665 C3orf85A0A1B0GTC6 90 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 ERVH48-1M5A8F1 160 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 ASAH2BP0C7U1 165 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 SLC25A6P12236 298 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 DAOP14920 347 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 THBS3P49746 956 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 ZNF90Q03938 601 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 SLC25A42Q86VD7 318 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 S1PR3Q99500 378 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 CACNG5Q9UF02 275 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 ZMIZ1Q9ULJ6 1067 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 PMS2P1A4D2B8 440 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 HEXAP06865 529 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 ZNF574Q6ZN55 896 aaPredicted RBP11.18□□□□□ -0.62
USP53-209ENST00000514665 ZNF429Q86V71 674 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 OR2Y1Q8NGV0 311 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 RPS4Y2Q8TD47 263 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 SLC25A38Q96DW6 304 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 ADAT1Q9BUB4 502 aaKnown RBP11.18□□□□□ -0.62
USP53-209ENST00000514665 TMEM218A2RU14 115 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 H0Y8G0 127 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 GPR37O15354 613 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms