RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 TCRBV16S1A1N1A0A5B0 115 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 CDC14CA4D256 554 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 ONECUT2O95948 504 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 BCL2P10415 239 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 TMEM52BQ4KMG9 183 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 MARCH3Q86UD3 253 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 MS4A6EQ96DS6 147 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 ISG20L2Q9H9L3 353 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 LANCL2Q9NS86 450 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 NTMQ9P121 344 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 TAAR3PQ9P1P4 343 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 IL19Q9UHD0 177 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 A0A1B0GU03 582 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 SCRG1O75711 98 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 CSN3P07498 182 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 OR6C1Q96RD1 312 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 MPDU1O75352 247 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 CRYAAP02489 173 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 OR8B3Q8NGG8 313 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 SPPL3Q8TCT6 385 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 PPRC1Q5VV67 1664 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 TMEM272A0A1B0GTI8 110 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 IL4P05112 153 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 SMIM13P0DJ93 91 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 HOXD9P28356 352 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 CIRBPQ14011 172 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 GABRG3Q99928 467 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 IER2Q9BTL4 223 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 CA10Q9NS85 328 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 PIAS3Q9Y6X2 628 aa10.04□□□□□ -0.8
LIMCH1-217ENST00000512946 ALOX12BO75342 701 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 TSPAN13O95857 204 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 GHRHP01286 108 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 OPRK1P41145 380 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 ZNF121P58317 390 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 ZNF816Q0VGE8 651 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 SMAD2Q15796 467 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 IZUMO4Q1ZYL8 232 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 OR8A1Q8NGG7 326 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 GAL3ST2Q9H3Q3 398 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 NEU3Q9UQ49 428 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 RICTORQ6R327 1708 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 LEPROTL1O95214 131 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 NMUP48645 174 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 CYB561P49447 251 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 DYNLT3P51808 116 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 PRDX4Q13162 271 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 RTP2Q5QGT7 225 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 BTLAQ7Z6A9 289 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 OR4S2Q8NH73 311 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 SGMS2Q8NHU3 365 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 ASB16Q96NS5 453 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 PLEKHB1Q9UF11 243 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 MROH1Q8NDA8 1641 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 A0A1B0GX78 115 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 FCMRO60667 390 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 PITX3O75364 302 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 NMBP08949 121 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 PCMT1P22061 227 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 PTGER1P34995 402 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 SELENOPP49908 381 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 PRSS36Q5K4E3 855 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 VHLLQ6RSH7 139 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 TMEM179BQ7Z7N9 219 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 LRRTM3Q86VH5 581 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 VN1R1Q9GZP7 353 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 ZMIZ1Q9ULJ6 1067 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 ICAM5Q9UMF0 924 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 CA11O75493 328 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 SRSF10O75494 262 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 ACRP10323 421 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 PRF1P14222 555 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 CA13Q8N1Q1 262 aa10.03□□□□□ -0.8
LIMCH1-217ENST00000512946 H0YIG0 161 aa10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 CYBAP13498 195 aa10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 CD38P28907 300 aa10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 KCNAB1Q14722 419 aa10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 ZNF770Q6IQ21 691 aaPredicted RBP10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 CLEC18BQ6UXF7 455 aa10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 FBXL14Q8N1E6 418 aa10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 BCORP1Q8N888 145 aa10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 PTPMT1Q8WUK0 201 aaPredicted RBP10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 MS4A3Q96HJ5 214 aa10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 C11orf68Q9H3H3 251 aaKnown RBP10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 MRPS2Q9Y399 296 aaKnown RBP10.02□□□□□ -0.8
LIMCH1-217ENST00000512946 OR4C45A6NMZ5 311 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 H3BNC9 293 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 ZNF141Q15928 474 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 SLC25A30Q5SVS4 291 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 DCAF12Q5T6F0 453 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 PTX4Q96A99 478 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 GUCD1Q96NT3 240 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 CD40P25942 277 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 PAPPA-AS1Q5QFB9 102 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 SIRT6Q8N6T7 355 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 OR2I1PQ8NGU4 316 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 DHRS3O75911 302 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 DAOP14920 347 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 SP6Q3SY56 376 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms