RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CHCHD2Q9Y6H1 151 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-215ENST00000512632 EML6Q6ZMW3 1958 aa8.06□□□□□ -1.12
LIMCH1-215ENST00000512632 E5RGE8 158 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 PHF1O43189 567 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 IGLV3-1P01715 115 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 IFNA4P05014 189 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 EIF1P41567 113 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 CLINT1Q14677 625 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 UBAC2Q8NBM4 344 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 DMBX1Q8NFW5 382 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 FAM213BQ8TBF2 198 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 PLEKHA2Q9HB19 425 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 TUBD1Q9UJT1 453 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 NSG2Q9Y328 171 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 IGLV3-32A0A0A0MS00 114 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 BORCS7-ASMTA0A0B4J1R7 106 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 TP53I11O14683 189 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 S100A9P06702 114 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 CD63P08962 238 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 PPP1CCP36873 323 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 SNCAP37840 140 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 FABP9Q0Z7S8 132 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 SPTSSAQ969W0 71 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 BORCS8Q96FH0 119 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 NIT2Q9NQR4 276 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 SLC2A9Q9NRM0 540 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 P4HTMQ9NXG6 502 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 CACNA1EQ15878 2313 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 A0A1W2PPE2 198 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 TXNL1O43396 289 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 H3F3AP84243 136 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 TMEM187Q14656 261 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 TMEM182Q6ZP80 229 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 CHRDQ9H2X0 955 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 NECAP2Q9NVZ3 263 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 STARD10Q9Y365 291 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 PUS1Q9Y606 427 aaKnown RBP eCLIP8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 IGKV1-12A0A0C4DH73 117 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 A0A0J9YW62 118 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 UMAD1C9J7I0 102 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 TNFSF11O14788 317 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 IGKV1D-12P01611 117 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 C15orf54Q8N8G6 183 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 LILRB1Q8NHL6 650 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 KCNJ16Q9NPI9 418 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 OCIAD1Q9NX40 245 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 LUZP4Q9P127 313 aa8.05□□□□□ -1.12
LIMCH1-215ENST00000512632 GPR37O15354 613 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 DANCRP0C864 163 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 ZNF84P51523 738 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 ABHD14AQ9BUJ0 271 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 ZNF576Q9H609 170 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 C19orf12Q9NSK7 152 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 AHCTF1Q8WYP5 2266 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 FAM24AA6NFZ4 105 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 LINC00587B1AMM8 73 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 B4GALT1P15291 398 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 NQO2P16083 231 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 ZNF133P52736 654 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 MAML2Q8IZL2 1156 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 FADS6Q8N9I5 356 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 OR10AD1Q8NGE0 317 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 SLAMF9Q96A28 289 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 ALKBH3Q96Q83 286 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 MAGT1Q9H0U3 335 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 WNT16Q9UBV4 365 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 ZDHHC8Q9ULC8 765 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 ST3GAL6Q9Y274 331 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 CELSR3Q9NYQ7 3312 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 ZNF407Q9C0G0 2248 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 RRP8O43159 456 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 ST8SIA3O43173 380 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 OR7C1O76099 320 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 NXPH3O95157 252 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 MT-ND4LP03901 98 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 NSUN5P2Q63ZY6 315 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 ZIC4Q8N9L1 334 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 PIGCQ92535 297 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 ZNF442Q9H7R0 627 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 CRLF2Q9HC73 371 aa8.04□□□□□ -1.12
LIMCH1-215ENST00000512632 IGHV5-10-1A0A0J9YXX1 117 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 CHATP28329 748 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 OTX1P32242 354 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 NTF4P34130 210 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 RBP2P50120 134 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 LIAT1Q6ZQX7 453 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 RARRES2Q99969 163 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 SCRT1Q9BWW7 348 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 C19orf25Q9UFG5 118 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 LOC102725191A0A1B0GVB3 256 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 C5orf52A6NGY3 159 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 CDRT15L2A8MXV6 281 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 ZIC3O60481 467 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 ONECUT2O95948 504 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 SEC11BP0C7V7 166 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 NR2C1P13056 603 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 ECI1P42126 302 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 C10orf128Q5T292 105 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 RTL6Q6ICC9 239 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 YRDCQ86U90 279 aaKnown RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms