RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 FNDC9Q8TBE3 224 aa8.54□□□□□ -1.04
CLIP1-204ENST00000501271 PSMF1Q92530 271 aa8.54□□□□□ -1.04
CLIP1-204ENST00000501271 ARL11Q969Q4 196 aa8.54□□□□□ -1.04
CLIP1-204ENST00000501271 CNTNAP3BQ96NU0 1288 aa8.54□□□□□ -1.04
CLIP1-204ENST00000501271 CNTNAP3Q9BZ76 1288 aa8.54□□□□□ -1.04
CLIP1-204ENST00000501271 NECAP2Q9NVZ3 263 aa8.54□□□□□ -1.04
CLIP1-204ENST00000501271 P4HTMQ9NXG6 502 aa8.54□□□□□ -1.04
CLIP1-204ENST00000501271 ZNF705EA8MWA4 302 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 TOR1AO14656 332 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 TPD52L2O43399 206 aaKnown RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 CYTIPO60759 359 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 MMP7P09237 267 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 ACP1P24666 158 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 CYB561P49447 251 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 PDZK1IP1Q13113 114 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 DAZAP2Q15038 168 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 OR8B8Q15620 311 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 GUCA2BQ16661 112 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 SP6Q3SY56 376 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 GGNBP1Q5YKI7 109 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 PLCXD3Q63HM9 321 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 SPINK14Q6IE38 97 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 DHRS11Q6UWP2 260 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 C6orf15Q6UXA7 325 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 BATF2Q8N1L9 274 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 OSR2Q8N2R0 312 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 CPEB3Q8NE35 698 aaKnown RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 WNT2BQ93097 391 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 GUCD1Q96NT3 240 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 LPAR3Q9UBY5 353 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 TUBD1Q9UJT1 453 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 COLQQ9Y215 455 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 ST3GAL6Q9Y274 331 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 ATP6V1G2-DDX39BF2Z307 99 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 ZNHIT1O43257 154 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 DEDDO75618 318 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 SERPINA7P05543 415 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 RFC3P40938 356 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 FXYD4P59646 89 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 SSPNQ14714 243 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 ZNF169Q14929 603 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 CCDC157Q569K6 752 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 PABPC1L2AQ5JQF8 200 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 TSPO2Q5TGU0 170 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 SLC22A25Q6T423 547 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 CALHM1Q8IU99 346 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 C1orf210Q8IVY1 113 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 PUSL1Q8N0Z8 303 aaKnown RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 PIGCQ92535 297 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 CPNE4Q96A23 557 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 TSNAXQ99598 290 aaKnown RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 ADAT1Q9BUB4 502 aaKnown RBP8.53□□□□□ -1.04
CLIP1-204ENST00000501271 RGCCQ9H4X1 137 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 TMEM231Q9H6L2 316 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 ZC4H2Q9NQZ6 224 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 MMP26Q9NRE1 261 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 IL36GQ9NZH8 169 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 ZNF391Q9UJN7 358 aa8.53□□□□□ -1.04
CLIP1-204ENST00000501271 AHCTF1Q8WYP5 2266 aa8.52□□□□□ -1.04
CLIP1-204ENST00000501271 KMT2EQ8IZD2 1858 aa8.52□□□□□ -1.04
CLIP1-204ENST00000501271 HAX1O00165 279 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 LRP3O75074 770 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 OR5AC1P0C628 307 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 ZNF728P0DKX0 622 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 CTRB1P17538 263 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 FUT6P51993 359 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 PCBD1P61457 104 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 CTRB2Q6GPI1 263 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 NAA60Q9H7X0 242 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 BCO1Q9HAY6 547 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 TAF9BQ9HBM6 251 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 MRPS18CQ9Y3D5 142 aaKnown RBP8.52□□□□□ -1.05
CLIP1-204ENST00000501271 LSM5Q9Y4Y9 91 aaKnown RBP8.52□□□□□ -1.05
CLIP1-204ENST00000501271 TECTAO75443 2155 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 ZNF816-ZNF321PA0A0X1KG74 233 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 K7EPK0 472 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 SCGB1D2O95969 90 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 CELA3AP09093 270 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 RPL12P30050 165 aaKnown RBP8.52□□□□□ -1.05
CLIP1-204ENST00000501271 FCGR2CP31995 323 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 LPAR6P43657 344 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 TMEM187Q14656 261 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 PHLDA2Q53GA4 152 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 PDSS1Q5T2R2 415 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 FAM71E2Q8N5Q1 922 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 RTN4IP1Q8WWV3 396 aaPredicted RBP8.52□□□□□ -1.05
CLIP1-204ENST00000501271 THOC3Q96J01 351 aaKnown RBP8.52□□□□□ -1.05
CLIP1-204ENST00000501271 C1QTNF5Q9BXJ0 243 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 HRH4Q9H3N8 390 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 PLA2G2EQ9NZK7 142 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 LRFN1Q9P244 771 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 ZNF629Q9UEG4 869 aaPredicted RBP8.52□□□□□ -1.05
CLIP1-204ENST00000501271 FBXL17Q9UF56 701 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 SLC7A11Q9UPY5 501 aa8.52□□□□□ -1.05
CLIP1-204ENST00000501271 ZNF407Q9C0G0 2248 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 TAAR5O14804 337 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 XRCC2O43543 280 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 PDCD6O75340 191 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 F12P00748 615 aaPredicted RBP8.51□□□□□ -1.05
CLIP1-204ENST00000501271 IFNA21P01568 189 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms