RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ARGFXA6NJG6 315 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SERPINA5P05154 406 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SFTPBP07988 381 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 BLOC1S1P78537 153 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 HGFACQ04756 655 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 FAM27BQ5VT28 67 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RTL6Q6ICC9 239 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 CCDC54Q8NEL0 328 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ULBP2Q9BZM5 246 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PLEKHJ1Q9NW61 149 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 MGAQ8IWI9 3026 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 IGKV1-27A0A075B6S5 117 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TNFSF11O14788 317 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 KLF7O75840 302 aaPredicted RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 F12P00748 615 aaPredicted RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 CTSDP07339 412 aaPredicted RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PET100P0DJ07 73 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RCC1P18754 421 aaPredicted RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 MRPS34P82930 218 aaKnown RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TRIP6Q15654 476 aaKnown RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 OR2A2Q6IF42 318 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 OR2AE1Q8NHA4 323 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SPTSSAQ969W0 71 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SAT2Q96F10 170 aaPredicted RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 UQCC1Q9NVA1 299 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 C1orf123Q9NWV4 160 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NXT1Q9UKK6 140 aaKnown RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 HS3ST3B1Q9Y662 390 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ZZEF1O43149 2961 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 A0A1B0GWJ7 208 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 CRYM-AS1A6NIL9 109 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ANGPTL7O43827 346 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 CLN5O75503 358 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ZNF883P0CG24 379 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TMEM225BP0DP42 221 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PTAFRP25105 342 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NTF4P34130 210 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 IAH1Q2TAA2 248 aaPredicted RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 DHRS7BQ6IAN0 325 aaPredicted RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 GALNTL5Q7Z4T8 443 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 JSRP1Q96MG2 331 aaPredicted RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TCEAL7Q9BRU2 100 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 FAAP24Q9BTP7 215 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NIT2Q9NQR4 276 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ANXA10Q9UJ72 324 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 DKKL1Q9UK85 242 aa13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PTRH2Q9Y3E5 179 aaKnown RBP13.99□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 MASP2O00187 686 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TAAR5O14804 337 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 LRP3O75074 770 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 FBP1P09467 338 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RBMXP38159 391 aaKnown RBP13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ECI1P42126 302 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 LPAR6P43657 344 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 MTCP1P56278 107 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ANKRD39Q53RE8 183 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 H3F3CQ6NXT2 135 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 CBLN2Q8IUK8 224 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 FOXRED2Q8IWF2 684 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 M1APQ8TC57 530 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 GLYATL2Q8WU03 294 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 GTF3AQ92664 365 aaKnown RBP13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 HRH4Q9H3N8 390 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TREM1Q9NP99 234 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TUBD1Q9UJT1 453 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 MEMO1Q9Y316 297 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 FAM96BQ9Y3D0 163 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 COL27A1Q8IZC6 1860 aaPredicted RBP13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SPRY1O43609 319 aaPredicted RBP13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SYNGR3O43761 229 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 MUC1P15941 1255 aaPredicted RBP13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NPBWR1P48145 328 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SSR4P51571 173 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RRADP55042 308 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RAC1P63000 192 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 IL11RAQ14626 422 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 EXT1Q16394 746 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ZNF468Q5VIY5 522 aaPredicted RBP13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TMEM268Q5VZI3 342 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 MRPL24Q96A35 216 aaKnown RBP13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SEC11CQ9BY50 192 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 METTL9Q9H1A3 318 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RHOFQ9HBH0 211 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TAF9BQ9HBM6 251 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 MIOXQ9UGB7 285 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 AK3Q9UIJ7 227 aa13.98□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 CHD8Q9HCK8 2581 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NCKAP5O14513 1909 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ZNF729A6NN14 1252 aaPredicted RBP13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PROB1E7EW31 1015 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 CCL4P13236 92 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PRSS12P56730 875 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 B3GALT5-AS1P59052 145 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RAB35Q15286 201 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TAF9Q16594 264 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 GGNBP1Q5YKI7 109 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PLXDC2Q6UX71 529 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SGPP2Q8IWX5 399 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NAT6Q93015 286 aa13.97□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 MR1Q95460 341 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms