RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 OR2A4O95047 310 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 ETHE1O95571 254 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 CPSF4O95639 269 aaKnown RBP1.48□□□□□ -2.17
VPS50-219ENST00000495039 IGHMP01871 453 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 HOXB8P17481 243 aaPredicted RBP1.48□□□□□ -2.17
VPS50-219ENST00000495039 PRKACAP17612 351 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 SRMP19623 302 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 CD9P21926 228 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 HTR2BP41595 481 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 RPL31P62899 125 aaKnown RBP1.48□□□□□ -2.17
VPS50-219ENST00000495039 IFFO1Q0D2I5 559 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 TOMM34Q15785 309 aaPredicted RBP1.48□□□□□ -2.17
VPS50-219ENST00000495039 LINC00303Q3SY05 128 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 DUPD1Q68J44 220 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 CLEC19AQ6UXS0 136 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 ARHGAP18Q8N392 663 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 CCNYL1Q8N7R7 359 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 LY6G5BQ8NDX9 201 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 OR8A1Q8NGG7 326 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 NT5CQ8TCD5 201 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 ZNF707Q96C28 371 aaPredicted RBP1.48□□□□□ -2.17
VPS50-219ENST00000495039 CENPNQ96H22 339 aaPredicted RBP1.48□□□□□ -2.17
VPS50-219ENST00000495039 OR2A7Q96R45 310 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 SRRQ9GZT4 340 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 COA1Q9GZY4 146 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 ACOT9Q9Y305 439 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 INSIG2Q9Y5U4 225 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 ZNF780BQ9Y6R6 833 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 AQRO60306 1485 aaKnown RBP eCLIP1.48□□□□□ -2.17
VPS50-219ENST00000495039 GOLGA6L7A0A1B0GV03 622 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 UPK1AO00322 258 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 TCAPO15273 167 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 GATCO43716 136 aaKnown RBP1.47□□□□□ -2.17
VPS50-219ENST00000495039 DHRS3O75911 302 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 MBP02144 154 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 RHOCP08134 193 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 PTHLHP12272 177 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 FOXA1P55317 472 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 IL5RAQ01344 420 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 ENDOGQ14249 297 aaKnown RBP1.47□□□□□ -2.17
VPS50-219ENST00000495039 ATP6AP1LQ52LC2 224 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 HSP90AA4PQ58FG1 418 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 SYT6Q5T7P8 510 aaPredicted RBP1.47□□□□□ -2.17
VPS50-219ENST00000495039 PRNTQ86SH4 94 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 CPNE9Q8IYJ1 553 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 ZNF555Q8NEP9 628 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 OR51L1Q8NGJ5 315 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 PHOSPHO2Q8TCD6 241 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 FXYD5Q96DB9 178 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 ZNF75AQ96N20 296 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 RILPQ96NA2 401 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 C20orf144Q9BQM9 153 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 TSGA10Q9BZW7 698 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 CRLF2Q9HC73 371 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 FLVCR2Q9UPI3 526 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 ICOSQ9Y6W8 199 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 CACNA1DQ01668 2161 aa1.47□□□□□ -2.17
VPS50-219ENST00000495039 MUC6Q6W4X9 2439 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 A0A1W2PPV4 95 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 ANKRD20A5PA0PJZ0 165 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 SEC14L6B5MCN3 397 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 MLNP12872 115 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 IMPA1P29218 277 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 ARR3P36575 388 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 SLC18A1P54219 525 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 SSX1Q16384 188 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 LGALSLQ3ZCW2 172 aaPredicted RBP1.46□□□□□ -2.18
VPS50-219ENST00000495039 TTMPQ5BVD1 217 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 IDNKQ5T6J7 187 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 SETD3Q86TU7 594 aaPredicted RBP1.46□□□□□ -2.18
VPS50-219ENST00000495039 NELFCDQ8IXH7 590 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 AMN1Q8IY45 258 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 EIF4E3Q8N5X7 224 aaKnown RBP1.46□□□□□ -2.18
VPS50-219ENST00000495039 LINC00337Q8N6G1 96 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 OR8S1Q8NH09 359 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 MUC7Q8TAX7 377 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 UBA3Q8TBC4 463 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 CHRNA10Q9GZZ6 450 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 PORCNQ9H237 461 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 SLC38A1Q9H2H9 487 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 FBXO44Q9H4M3 255 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 WDR55Q9H6Y2 383 aaPredicted RBP1.46□□□□□ -2.18
VPS50-219ENST00000495039 AP3M1Q9Y2T2 418 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 PLXNB3Q9ULL4 1909 aa1.46□□□□□ -2.18
VPS50-219ENST00000495039 ADAMTSL3P82987 1691 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 MIA3Q5JRA6 1907 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 IGLV10-54A0A075B6I4 117 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 LOC389332A0A1B0GUA5 103 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 LEUTXA8MZ59 168 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 K7EPK0 472 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 K7ERS5 55 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 M0R1B8 84 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 SLC37A4O43826 429 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 COX7A2P2O60397 106 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 ALOX12BO75342 701 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 IGHV3-53P01767 116 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 TRGV3P03979 118 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 TAC1P20366 129 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 KRTAP25-1Q3LHN0 102 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 CLLU1OSQ5K130 101 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms