RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PRORYQ9H606 182 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 ABCB9Q9NP78 766 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 ACOT13Q9NPJ3 140 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 C12orf4Q9NQ89 552 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 PARP11Q9NR21 331 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 VAPAQ9P0L0 249 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 AK9Q5TCS8 1911 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 IZUMO1RA6ND01 250 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 E7EWF7 191 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 NDUFS8O00217 210 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 TCAPO15273 167 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 OR2A4O95047 310 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 CD8AP01732 235 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 TAC1P20366 129 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 TUFMP49411 452 aaKnown RBP1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 FLI1Q01543 452 aaPredicted RBP1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 VAMP3Q15836 100 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 TNXAQ16473 311 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 ACTL10Q5JWF8 245 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 CLLU1OSQ5K130 101 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 IDNKQ5T6J7 187 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 FAHD1Q6P587 224 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 TRMT10CQ7L0Y3 403 aaKnown RBP1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 NT5DC3Q86UY8 548 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 GAPTQ8N292 157 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 ZFP62Q8NB50 900 aaPredicted RBP1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF555Q8NEP9 628 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 LGALS14Q8TCE9 139 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 GLT1D1Q96MS3 346 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 QKIQ96PU8 341 aaKnown RBP eCLIP1.43□□□□□ -2.183e-7■■■■■ 44.5
CCDC88A-212ENST00000474059 OR2M4Q96R27 311 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 OR2A7Q96R45 310 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 PEBP4Q96S96 227 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 VAT1Q99536 393 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 SIKE1Q9BRV8 207 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 PRRG3Q9BZD7 231 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 ASB7Q9H672 318 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 WDR55Q9H6Y2 383 aaPredicted RBP1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 RDH14Q9HBH5 336 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 FAM60AQ9NP50 221 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 OR2S2Q9NQN1 319 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF302Q9NR11 478 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 TMEM38BQ9NVV0 291 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 RBM22Q9NW64 420 aaKnown RBP eCLIP1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 RMND1Q9NWS8 449 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF229Q9UJW7 825 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 RBMX2Q9Y388 322 aaKnown RBP1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 INSIG2Q9Y5U4 225 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 SLC22A7Q9Y694 548 aa1.43□□□□□ -2.18
CCDC88A-212ENST00000474059 SYNRGQ9UMZ2 1314 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 PLXNB3Q9ULL4 1909 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 LOC389332A0A1B0GUA5 103 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 OR2AT4A6NND4 320 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 C9JQL5 133 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 ENSAO43768 121 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 SPOPO43791 374 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 KCNK2O95069 426 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 RLN2P04090 185 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 S100A9P06702 114 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 SNRPAP09012 282 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 CCNOP22674 350 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 SLC18A1P54219 525 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 PRKCDQ05655 676 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 C2orf80Q0P641 193 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 STX4Q12846 297 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 GUSBP1Q15486 140 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 SSX1Q16384 188 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 CEACAM16Q2WEN9 425 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF404Q494X3 552 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 FA2HQ7L5A8 372 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 PDCL2Q8N4E4 241 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 OR5H2Q8NGV7 314 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 LRRC20Q8TCA0 184 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 DOK4Q8TEW6 326 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 C22orf15Q8WYQ4 148 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 RBPMSQ93062 196 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 CIB1Q99828 191 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 THTPAQ9BU02 230 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 SRRQ9GZT4 340 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 RAB1BQ9H0U4 201 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 VSIRQ9H7M9 311 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 CLEC2DQ9UHP7 191 aa1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 BAZ1BQ9UIG0 1483 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-212ENST00000474059 THADAQ6YHU6 1953 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 RAB19A4D1S5 217 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 MGAT4DA6NG13 374 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 PSMD11O00231 422 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 CXorf1O96002 111 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 IGHG2P01859 326 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 CDK1P06493 297 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 IVLP07476 585 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 INAFM2P0DMQ5 153 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 M6PRP20645 277 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 IMPA1P29218 277 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 SLC6A1P30531 599 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 HTR2BP41595 481 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 DNASE1L1P49184 302 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 ACOT2P49753 483 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 ETV1P50549 477 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 TNNC1P63316 161 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms