RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ATP1A1-AS1Q5TC04 95 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 ZNF585AQ6P3V2 769 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 OR11L1Q8NGX0 322 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 TAAR9Q96RI9 348 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 IL36RNQ9UBH0 155 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 C14orf166Q9Y224 244 aaKnown RBP16.51■□□□□ 0.23
VIM-203ENST00000469543 HSPB6O14558 160 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 DNPH1O43598 174 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 NGFP01138 241 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 IGHEP01854 428 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 FCGR3AP08637 254 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 RCC1P18754 421 aaPredicted RBP16.51■□□□□ 0.23
VIM-203ENST00000469543 CHATP28329 748 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 PIGPP57054 158 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 IAH1Q2TAA2 248 aaPredicted RBP16.51■□□□□ 0.23
VIM-203ENST00000469543 SLC25A26Q70HW3 274 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 CPNE4Q96A23 557 aaPredicted RBP16.51■□□□□ 0.23
VIM-203ENST00000469543 MRPL24Q96A35 216 aaKnown RBP16.51■□□□□ 0.23
VIM-203ENST00000469543 ADAT1Q9BUB4 502 aaKnown RBP16.51■□□□□ 0.23
VIM-203ENST00000469543 MAP1BP46821 2468 aaKnown RBP16.51■□□□□ 0.23
VIM-203ENST00000469543 DBX2Q6ZNG2 339 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 BAP18Q8IXM2 172 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 POC1AQ8NBT0 407 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 C10orf35Q96D05 121 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 TMEM231Q9H6L2 316 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 ZNF703Q9H7S9 590 aaPredicted RBP16.5■□□□□ 0.23
VIM-203ENST00000469543 SMG1Q96Q15 3661 aaKnown RBP16.5■□□□□ 0.23
VIM-203ENST00000469543 C5orf49A4QMS7 147 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 OR7C1O76099 320 aaPredicted RBP16.5■□□□□ 0.23
VIM-203ENST00000469543 IFNA2P01563 188 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 DUSP1P28562 367 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 LHX2P50458 406 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 CYCSP99999 105 aaKnown RBP16.5■□□□□ 0.23
VIM-203ENST00000469543 IL15RAQ13261 267 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 TMEM42Q69YG0 159 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 SLC22A25Q6T423 547 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 DHRS13Q6UX07 377 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 OSR2Q8N2R0 312 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 C2orf50Q96LR7 162 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 SMIM3Q9BZL3 60 aa16.5■□□□□ 0.23
VIM-203ENST00000469543 SCGB1D2O95969 90 aa16.49■□□□□ 0.23
VIM-203ENST00000469543 ACTL6AO96019 429 aa16.49■□□□□ 0.23
VIM-203ENST00000469543 CNN3Q15417 329 aaKnown RBP16.49■□□□□ 0.23
VIM-203ENST00000469543 OR1C1Q15619 314 aa16.49■□□□□ 0.23
VIM-203ENST00000469543 KRTAP27-1Q3LI81 207 aa16.49■□□□□ 0.23
VIM-203ENST00000469543 ABHD17BQ5VST6 288 aa16.49■□□□□ 0.23
VIM-203ENST00000469543 PRSS54Q6PEW0 395 aa16.49■□□□□ 0.23
VIM-203ENST00000469543 EIF4E3Q8N5X7 224 aaKnown RBP16.49■□□□□ 0.23
VIM-203ENST00000469543 ZNF611Q8N823 705 aa16.49■□□□□ 0.23
VIM-203ENST00000469543 SCGB3A2Q96PL1 93 aa16.49■□□□□ 0.23
VIM-203ENST00000469543 FGF23Q9GZV9 251 aaPredicted RBP16.49■□□□□ 0.23
VIM-203ENST00000469543 FCGR2CP31995 323 aa16.49■□□□□ 0.23
VIM-203ENST00000469543 CLDN18P56856 261 aa16.49■□□□□ 0.23
VIM-203ENST00000469543 AIMP2Q13155 320 aaKnown RBP16.49■□□□□ 0.23
VIM-203ENST00000469543 F12P00748 615 aaPredicted RBP16.48■□□□□ 0.23
VIM-203ENST00000469543 PRKACBP22694 351 aa16.48■□□□□ 0.23
VIM-203ENST00000469543 RBMXP38159 391 aaKnown RBP16.48■□□□□ 0.23
VIM-203ENST00000469543 PLEKHN1Q494U1 663 aaPredicted RBP16.48■□□□□ 0.23
VIM-203ENST00000469543 IGSF11Q5DX21 431 aa16.48■□□□□ 0.23
VIM-203ENST00000469543 DCAF10Q5QP82 559 aa16.48■□□□□ 0.23
VIM-203ENST00000469543 RPL7L1Q6DKI1 246 aaKnown RBP16.48■□□□□ 0.23
VIM-203ENST00000469543 OR56B2PQ8NGI1 322 aa16.48■□□□□ 0.23
VIM-203ENST00000469543 LRRC46Q96FV0 321 aa16.48■□□□□ 0.23
VIM-203ENST00000469543 PAPOLGQ9BWT3 736 aaKnown RBP16.48■□□□□ 0.23
VIM-203ENST00000469543 TTTY12Q9BZ98 90 aa16.48■□□□□ 0.23
VIM-203ENST00000469543 STRADBQ9C0K7 418 aa16.48■□□□□ 0.23
VIM-203ENST00000469543 PARP12Q9H0J9 701 aaKnown RBP16.48■□□□□ 0.23
VIM-203ENST00000469543 LHX6Q9UPM6 363 aa16.48■□□□□ 0.23
VIM-203ENST00000469543 OR5AC1P0C628 307 aa16.48■□□□□ 0.23
VIM-203ENST00000469543 RIPPLY2Q5TAB7 128 aa16.48■□□□□ 0.23
VIM-203ENST00000469543 CDX4O14627 284 aaPredicted RBP16.47■□□□□ 0.23
VIM-203ENST00000469543 TERTO14746 1132 aaKnown RBP16.47■□□□□ 0.23
VIM-203ENST00000469543 ZNF708P17019 499 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 GPM6AP51674 278 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 LYZL2Q7Z4W2 148 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 SGPP2Q8IWX5 399 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 SPERTQ8NA61 448 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 OR5L1Q8NGL2 311 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 PHYHIPLQ96FC7 376 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 BOKQ9UMX3 212 aaPredicted RBP16.47■□□□□ 0.23
VIM-203ENST00000469543 LSM5Q9Y4Y9 91 aaKnown RBP16.47■□□□□ 0.23
VIM-203ENST00000469543 SVILO95425 2214 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 FAM74A7A6NL05 159 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 LILRA1O75019 489 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 DIRAS3O95661 229 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 FAM157CP0CG43 387 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 CD79AP11912 226 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 TPT1P13693 172 aaKnown RBP16.47■□□□□ 0.23
VIM-203ENST00000469543 ID4P47928 161 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 OR8B8Q15620 311 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 FAM74A3Q4VXF1 159 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 GGNBP1Q5YKI7 109 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 TFAP2EQ6VUC0 442 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 LHFPL2Q6ZUX7 228 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 ZNF442Q9H7R0 627 aa16.47■□□□□ 0.23
VIM-203ENST00000469543 FBXO24O75426 580 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 FARS2O95363 451 aaKnown RBP16.46■□□□□ 0.23
VIM-203ENST00000469543 CD59P13987 128 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 SLAMF9Q96A28 289 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 BSCL2Q96G97 398 aaPredicted RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms