RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 MBD3L2Q8NHZ7 208 aaPredicted RBP6.55□□□□□ -1.36
COL6A3-208ENST00000468792 HPSE2Q8WWQ2 592 aa6.55□□□□□ -1.36
COL6A3-208ENST00000468792 OR5P3Q8WZ94 311 aa6.55□□□□□ -1.36
COL6A3-208ENST00000468792 HIST1H2AAQ96QV6 131 aa6.55□□□□□ -1.36
COL6A3-208ENST00000468792 PPA2Q9H2U2 334 aa6.55□□□□□ -1.36
COL6A3-208ENST00000468792 RIMS4Q9H426 269 aaPredicted RBP6.55□□□□□ -1.36
COL6A3-208ENST00000468792 C5orf66Q9H5L9 145 aa6.55□□□□□ -1.36
COL6A3-208ENST00000468792 FN3KRPQ9HA64 309 aa6.55□□□□□ -1.36
COL6A3-208ENST00000468792 ELL3Q9HB65 397 aaPredicted RBP6.55□□□□□ -1.36
COL6A3-208ENST00000468792 RCC2Q9P258 522 aaKnown RBP6.55□□□□□ -1.36
COL6A3-208ENST00000468792 ST3GAL6Q9Y274 331 aa6.55□□□□□ -1.36
COL6A3-208ENST00000468792 U3KQ87 197 aa6.55□□□□□ -1.36
COL6A3-208ENST00000468792 MED12LQ86YW9 2145 aa6.55□□□□□ -1.36
COL6A3-208ENST00000468792 FRYQ5TBA9 3013 aa6.55□□□□□ -1.36
COL6A3-208ENST00000468792 ZFHX4Q86UP3 3567 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 LOC400499M0QZD8 3231 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 CFAP47Q6ZTR5 3102 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 TRBV6-6A0A0A6YYG2 114 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 M0R233 179 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 GOSR2O14653 212 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 SPRY1O43609 319 aaPredicted RBP6.54□□□□□ -1.36
COL6A3-208ENST00000468792 ANGPTL7O43827 346 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 WDR1O75083 606 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 SFT2D2O95562 160 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 NGFP01138 241 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 CRYABP02511 175 aaKnown RBP6.54□□□□□ -1.36
COL6A3-208ENST00000468792 CTSDP07339 412 aaPredicted RBP6.54□□□□□ -1.36
COL6A3-208ENST00000468792 SFTPBP07988 381 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 FCGR3AP08637 254 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 RAC2P15153 192 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 GABRR1P24046 479 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 UCP3P55916 312 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 UBE2NP61088 152 aaKnown RBP6.54□□□□□ -1.36
COL6A3-208ENST00000468792 TSPAN5P62079 268 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 PMP22Q01453 160 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 PPP1R1AQ13522 171 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 ZNF345Q14585 488 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 TAF9Q16594 264 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 C2orf68Q2NKX9 166 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 PLEKHN1Q494U1 663 aaPredicted RBP6.54□□□□□ -1.36
COL6A3-208ENST00000468792 HIKESHIQ53FT3 197 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 KRTCAP3Q53RY4 240 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 C11orf88Q6PI97 169 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 C3P1Q6ZMU1 363 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 C6orf201Q7Z4U5 140 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 TMED4Q7Z7H5 227 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 CALHM1Q8IU99 346 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 Q8IYB0 196 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 FBXL14Q8N1E6 418 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 ZNF680Q8NEM1 530 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 OR13G1Q8NGZ3 307 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 TRIB1Q96RU8 372 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 VRK1Q99986 396 aaPredicted RBP6.54□□□□□ -1.36
COL6A3-208ENST00000468792 CMSS1Q9BQ75 279 aaKnown RBP6.54□□□□□ -1.36
COL6A3-208ENST00000468792 RTBDNQ9BSG5 229 aaPredicted RBP6.54□□□□□ -1.36
COL6A3-208ENST00000468792 ST6GALNAC5Q9BVH7 336 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 PAPOLGQ9BWT3 736 aaKnown RBP6.54□□□□□ -1.36
COL6A3-208ENST00000468792 NMES1Q9C002 83 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 CLEC4MQ9H2X3 399 aaPredicted RBP6.54□□□□□ -1.36
COL6A3-208ENST00000468792 C12orf49Q9H741 205 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 RAB18Q9NP72 206 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 C12orf4Q9NQ89 552 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 NECAP2Q9NVZ3 263 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 DKK4Q9UBT3 224 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 SLC23A1Q9UHI7 598 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 AK3Q9UIJ7 227 aa6.54□□□□□ -1.36
COL6A3-208ENST00000468792 TRBV6-7A0A0A0MS04 114 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 A0A0D9SG52 128 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 A0A1B0GWJ7 208 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 OR5H14A6NHG9 310 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 TMEM210A6NLX4 147 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 IQCF6A8MYZ5 107 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 ZNF732B4DXR9 585 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 GEMIN2O14893 280 aaKnown RBP6.53□□□□□ -1.36
COL6A3-208ENST00000468792 SMPD2O60906 423 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 NAPSAO96009 420 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 CGAP01215 116 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 IGLV1-44P01699 117 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 CTXN2P0C2S0 81 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 ZNF35P13682 527 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 RPS2P15880 293 aaKnown RBP6.53□□□□□ -1.36
COL6A3-208ENST00000468792 CCNOP22674 350 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 S100A11P31949 105 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 TIMP3P35625 211 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 ZNF81P51508 661 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 SNRPD2P62316 118 aaKnown RBP6.53□□□□□ -1.36
COL6A3-208ENST00000468792 OPCMLQ14982 345 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 DAZAP2Q15038 168 aaPredicted RBP6.53□□□□□ -1.36
COL6A3-208ENST00000468792 RSPO4Q2I0M5 234 aaPredicted RBP6.53□□□□□ -1.36
COL6A3-208ENST00000468792 C9orf135Q5VTT2 229 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 SHEQ5VZ18 495 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 RFPL4BQ6ZWI9 263 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 SLC25A26Q70HW3 274 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 RTN4RL2Q86UN3 420 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 C9orf106Q8NAJ2 232 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 COQ8AQ8NI60 647 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 SNIP1Q8TAD8 396 aaKnown RBP6.53□□□□□ -1.36
COL6A3-208ENST00000468792 MARCH1Q8TCQ1 289 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 TMEM230Q96A57 120 aa6.53□□□□□ -1.36
COL6A3-208ENST00000468792 PIK3IP1Q96FE7 263 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms