RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 THY1P04216 161 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 GAPDHP04406 335 aaKnown RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 GKN3PP0CG01 181 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 STAG3L3P0CL85 134 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 IFI30P13284 250 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 CPMP14384 443 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 COX5AP20674 150 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 GABRA3P34903 492 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 CD79BP40259 229 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 ETV6P41212 452 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 RPL29P47914 159 aaKnown RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 RFX3P48380 749 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 TMED10P49755 219 aaKnown RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 EFNA3P52797 238 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 WNT4P56705 351 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 PLP1P60201 277 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 KRTAP10-8P60410 259 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 PSPHP78330 225 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 PAX8Q06710 450 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 KRR1Q13601 381 aaKnown RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 MICBQ29980 383 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 PGGHGQ32M88 737 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 ZNF791Q3KP31 576 aaPredicted RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 ARHGAP11BQ3KRB8 267 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 TRMT12Q53H54 448 aaKnown RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 EIPR1Q53HC9 387 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 EOGTQ5NDL2 527 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 SLC25A30Q5SVS4 291 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 C22orf42Q6IC83 251 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 SPINK14Q6IE38 97 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 HSDL2Q6YN16 418 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 TMPRSS11AQ6ZMR5 421 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 ZNF620Q6ZNG0 422 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 C19orf35Q6ZS72 473 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 Q6ZSR6 202 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 MBOAT2Q6ZWT7 520 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 ABHD13Q7L211 337 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 GDPD3Q7L5L3 318 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 PRSS41Q7RTY9 318 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 NRMQ8IXM6 262 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 OR2L13Q8N349 312 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 COX18Q8N8Q8 333 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 OR4F15Q8NGB8 312 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 OR5T3Q8NGG3 340 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 GPR151Q8TDV0 419 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 ITLN1Q8WWA0 313 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 PATE1Q8WXA2 126 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 ACOT11Q8WXI4 607 aaPredicted RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 FGF11Q92914 225 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 TM4SF19Q96DZ7 209 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 KCTD7Q96MP8 289 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 FAM210AQ96ND0 272 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 OR2A5Q96R48 311 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 CNN2Q99439 309 aaKnown RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 SDF2Q99470 211 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 RNF2Q99496 336 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 CCDC32Q9BV29 185 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 TPK1Q9H3S4 243 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 PIGUQ9H490 435 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 NARFLQ9H6Q4 476 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 ABCB9Q9NP78 766 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 FGF20Q9NP95 211 aaPredicted RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 TXNL4BQ9NX01 149 aaKnown RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 NDUFB11Q9NX14 153 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 DHRS4-AS1Q9P1J3 65 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 PAIP2BQ9ULR5 123 aaKnown RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 YARS2Q9Y2Z4 477 aaKnown RBP3.21□□□□□ -1.9
VPS29-202ENST00000447578 MOB4Q9Y3A3 225 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 SLC22A7Q9Y694 548 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 CDH10Q9Y6N8 788 aa3.21□□□□□ -1.9
VPS29-202ENST00000447578 NUP210Q8TEM1 1887 aaPredicted RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 TRAV9-2A0A087WT02 112 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 A0A0J9YY10 115 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 LOC100131303A0A0U1RQF7 123 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 A0A1W2PPE3 182 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 A0A1W2PQL4 384 aaPredicted RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 NDUFAF8A1L188 74 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 TRAPPC13A5PLN9 417 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 FABP12A6NFH5 140 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 FAM183AA6NL82 134 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 CDC42EP2O14613 210 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 CHST10O43529 356 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 GPR75O95800 540 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 RENP00797 406 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 HMGN1P05114 100 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 DBIP07108 87 aaKnown RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 CT62P0C5K7 136 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 LIMS3P0CW19 117 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 LIMS4P0CW20 117 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 CTSEP14091 401 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 GABRG2P18507 467 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 HTR1FP30939 366 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 SDC2P34741 201 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 LEPP41159 167 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 HNRNPA3P51991 378 aaKnown RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 CAV3P56539 151 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 RAB38P57729 211 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 VSX2P58304 361 aaPredicted RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 COPZ1P61923 177 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 PPP1CAP62136 330 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms