RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 OR5M11Q96RB7 305 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 ZNF184Q99676 751 aaPredicted RBP15.45■□□□□ 0.06
SHH-203ENST00000435425 CDCA4Q9BXL8 241 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 DUSP21Q9H596 190 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 HES4Q9HCC6 221 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 MAB21L2Q9Y586 359 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 A0A1W2PPK0 400 aa15.44■□□□□ 0.06
SHH-203ENST00000435425 MAGEB3O15480 346 aa15.44■□□□□ 0.06
SHH-203ENST00000435425 RGS9O75916 674 aaPredicted RBP15.44■□□□□ 0.06
SHH-203ENST00000435425 ECDO95905 644 aaPredicted RBP15.44■□□□□ 0.06
SHH-203ENST00000435425 TMEM225BP0DP42 221 aa15.44■□□□□ 0.06
SHH-203ENST00000435425 EPHA1P21709 976 aa15.44■□□□□ 0.06
SHH-203ENST00000435425 EEF1B2P24534 225 aaKnown RBP15.44■□□□□ 0.06
SHH-203ENST00000435425 YIF1BQ5BJH7 314 aa15.44■□□□□ 0.06
SHH-203ENST00000435425 RNLSQ5VYX0 342 aa15.44■□□□□ 0.06
SHH-203ENST00000435425 OR51A2Q8NGJ7 313 aa15.44■□□□□ 0.06
SHH-203ENST00000435425 C22orf15Q8WYQ4 148 aa15.44■□□□□ 0.06
SHH-203ENST00000435425 GPER1Q99527 375 aa15.44■□□□□ 0.06
SHH-203ENST00000435425 PCGF1Q9BSM1 259 aa15.44■□□□□ 0.06
SHH-203ENST00000435425 RBFOX1Q9NWB1 397 aaKnown RBP15.44■□□□□ 0.06
SHH-203ENST00000435425 RPUSD1Q9UJJ7 312 aaKnown RBP15.44■□□□□ 0.06
SHH-203ENST00000435425 TRBV5-5A0A0J9YX44 114 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 KNG1P01042 644 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 RPS11P62280 158 aaKnown RBP eCLIP15.43■□□□□ 0.06
SHH-203ENST00000435425 ARF6P62330 175 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 SRSF2Q01130 221 aaKnown RBP15.43■□□□□ 0.06
SHH-203ENST00000435425 SPHARQ15513 63 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 KISS1Q15726 138 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 Q499Y3 187 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 RBM48Q5RL73 367 aaKnown RBP15.43■□□□□ 0.06
SHH-203ENST00000435425 ASPHD2Q6ICH7 369 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 SDSLQ96GA7 329 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 OR14A2Q96R54 314 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 NKX3-1Q99801 234 aaPredicted RBP15.43■□□□□ 0.06
SHH-203ENST00000435425 Q9H521 79 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 ONECUT1Q9UBC0 465 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 IL36RNQ9UBH0 155 aa15.43■□□□□ 0.06
SHH-203ENST00000435425 IGKV1-12A0A0C4DH73 117 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 ZNF879B4DU55 563 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 TOX4O94842 621 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 ALX3O95076 343 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 IGKV1D-12P01611 117 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 LIPFP07098 398 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 PPIAL4GP0DN37 164 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 PRKACAP17612 351 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 DUSP1P28562 367 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 PPP3R1P63098 170 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 COL10A1Q03692 680 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 IRF3Q14653 427 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 KLF17Q5JT82 389 aaPredicted RBP15.42■□□□□ 0.06
SHH-203ENST00000435425 CRIP3Q6Q6R5 217 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 Q8IYB0 196 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 FAM58AQ8N1B3 248 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 ZNF561Q8N587 486 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 OR52N4Q8NGI2 321 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 DCTN5Q9BTE1 182 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 CNTD2Q9H8S5 307 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 LSM2Q9Y333 95 aaKnown RBP15.42■□□□□ 0.06
SHH-203ENST00000435425 NAV3Q8IVL0 2385 aa15.42■□□□□ 0.06
SHH-203ENST00000435425 TRAV40A0A0B4J280 105 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 A0A1W2PQ09 198 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 GPR37O15354 613 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 FSHBP01225 129 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 SFTPBP07988 381 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 HSMCR30P0CW71 290 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 IGHV4-38-2P0DP08 117 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 MAP2K4P45985 399 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 CAV3P56539 151 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 SCGB2A2Q13296 93 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 METTL11BQ5VVY1 283 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 ZNF529Q6P280 563 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 FIP1L1Q6UN15 594 aaKnown RBP15.41■□□□□ 0.06
SHH-203ENST00000435425 ASCC1Q8N9N2 400 aaKnown RBP15.41■□□□□ 0.06
SHH-203ENST00000435425 UPRTQ96BW1 309 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 WDFY2Q96P53 400 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 FAM192AQ9GZU8 254 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 NUP50Q9UKX7 468 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 BLOC1S6Q9UL45 172 aa15.41■□□□□ 0.06
SHH-203ENST00000435425 GABRPO00591 440 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 CHRM2P08172 466 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 BDKRB2P30411 391 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 TGFBR2P37173 567 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 ZP1P60852 638 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 BDH1Q02338 343 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 ACSM1Q08AH1 577 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 C11orf91Q3C1V1 193 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 DDI2Q5TDH0 399 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 PRSS48Q7RTY5 328 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 FAM185AQ8N0U4 392 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 BPIFB2Q8N4F0 458 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 LY6G5BQ8NDX9 201 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 TNFAIP8L1Q8WVP5 186 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 CPNE2Q96FN4 548 aaPredicted RBP15.4■□□□□ 0.06
SHH-203ENST00000435425 SLC6A7Q99884 636 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 TMED9Q9BVK6 235 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 TMEM138Q9NPI0 162 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 CKLFQ9UBR5 152 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 ZNF69Q9UC07 566 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 GSTK1Q9Y2Q3 226 aa15.4■□□□□ 0.06
SHH-203ENST00000435425 TRAV8-7A0A075B6U6 113 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms