RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 A0A1B0GTI1 187 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 MTRF1O75570 445 aaKnown RBP10.58□□□□□ -0.72
LINC00339-202ENST00000416769 INMTO95050 263 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 ZFPL1O95159 310 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 UBCP0CG48 685 aaKnown RBP10.58□□□□□ -0.72
LINC00339-202ENST00000416769 AMY2BP19961 511 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 CCL1P22362 96 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 DDOSTP39656 456 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 BPIFB3P59826 476 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 FAM3AP98173 230 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 NEDD8Q15843 81 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 MRPL21Q7Z2W9 205 aaKnown RBP10.58□□□□□ -0.72
LINC00339-202ENST00000416769 C11orf53Q8IXP5 236 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 MS4A15Q8N5U1 240 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 CELF2-AS1Q8N7Q2 184 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 ZNF676Q8N7Q3 588 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 ZFP41Q8N8Y5 198 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 OR51E1Q8TCB6 317 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 GHSRQ92847 366 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 UFD1Q92890 307 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 MUL1Q969V5 352 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 LYZL4Q96KX0 146 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 OPALINQ96PE5 141 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 CCL13Q99616 98 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 KRTAP3-3Q9BYR6 98 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 KRTAP3-2Q9BYR7 98 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 ONECUT1Q9UBC0 465 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 ZNF281Q9Y2X9 895 aa10.58□□□□□ -0.72
LINC00339-202ENST00000416769 A0A1B0GVI7 797 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 hCG_1807616A0A1W2PRN6 198 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 MEGF11A6BM72 1044 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 A6NLC8 198 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 RNASEK-C17orf49H0YIS7 233 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.57□□□□□ -0.72
LINC00339-202ENST00000416769 SYT7O43581 403 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 PTBP3O95758 552 aaKnown RBP10.57□□□□□ -0.72
LINC00339-202ENST00000416769 PSMB9P28065 219 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 NPY4RP50391 375 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 CD276Q5ZPR3 534 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 DHRS7BQ6IAN0 325 aaPredicted RBP10.57□□□□□ -0.72
LINC00339-202ENST00000416769 RDH10Q8IZV5 341 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 LYG1Q8N1E2 194 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 OR56B2PQ8NGI1 322 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 PPP1R35Q8TAP8 253 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 ITPKCQ96DU7 683 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 PGLYRP3Q96LB9 341 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 PDCD1LG2Q9BQ51 273 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 C16orf95Q9H693 158 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 GPR84Q9NQS5 396 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 ZNRD1Q9P1U0 126 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 SCOCQ9UIL1 159 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 RPUSD1Q9UJJ7 312 aaKnown RBP10.57□□□□□ -0.72
LINC00339-202ENST00000416769 HHLA2Q9UM44 414 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 FOXJ3Q9UPW0 622 aa10.57□□□□□ -0.72
LINC00339-202ENST00000416769 hCG_38984A0A1B0GV85 526 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 GGT3PA6NGU5 568 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 DHRS7CA6NNS2 312 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 CCRL2O00421 344 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 DHRS3O75911 302 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 TFAP2AP05549 437 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 CSF1P09603 554 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 MAP2K3P46734 347 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 GSK3AP49840 483 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 GP2P55259 537 aaKnown RBP10.56□□□□□ -0.72
LINC00339-202ENST00000416769 GMFBP60983 142 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 TRAM1Q15629 374 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 ODF4Q2M2E3 257 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 GFOD2Q3B7J2 385 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 YIF1BQ5BJH7 314 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 LIPKQ5VXJ0 399 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 KRT74Q7RTS7 529 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 Q8N7P7 452 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 PNLDC1Q8NA58 520 aaKnown RBP10.56□□□□□ -0.72
LINC00339-202ENST00000416769 CSNK2A3Q8NEV1 391 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 OR5T2Q8NGG2 359 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 OR14K1Q8NGZ2 314 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 GPR148Q8TDV2 347 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 ERGIC1Q969X5 290 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 C10orf35Q96D05 121 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 PPA2Q9H2U2 334 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 VPREB3Q9UKI3 123 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 SF3B6Q9Y3B4 125 aaKnown RBP10.56□□□□□ -0.72
LINC00339-202ENST00000416769 V9GYS6 101 aa10.56□□□□□ -0.72
LINC00339-202ENST00000416769 TRAV38-1A0A0B4J264 116 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 PNMA8CA0A1B0GUJ8 204 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 LOC107986453A0A1B0GWG9 222 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 LHBP01229 141 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 LIPFP07098 398 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 PSMA1P25786 263 aaKnown RBP10.55□□□□□ -0.72
LINC00339-202ENST00000416769 RPL5P46777 297 aaKnown RBP10.55□□□□□ -0.72
LINC00339-202ENST00000416769 ALDH3B2P48448 385 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 RPS11P62280 158 aaKnown RBP eCLIP10.55□□□□□ -0.72
LINC00339-202ENST00000416769 RIPPLY1Q0D2K3 151 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 IKZF1Q13422 519 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 SSX1Q16384 188 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 C2orf68Q2NKX9 166 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 ZBTB37Q5TC79 503 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 SAMD5Q5TGI4 173 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 SLC35E4Q6ICL7 350 aa10.55□□□□□ -0.72
LINC00339-202ENST00000416769 UNQ9370/PRO34162Q6UXP9 181 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms