RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 GIPP09681 153 aaPredicted RBP10.05□□□□□ -0.8
TTC28-201ENST00000397906 CD1EP15812 388 aa10.05□□□□□ -0.8
TTC28-201ENST00000397906 ZNF239Q16600 458 aaKnown RBP10.05□□□□□ -0.8
TTC28-201ENST00000397906 ZNF260Q3ZCT1 412 aa10.05□□□□□ -0.8
TTC28-201ENST00000397906 SCARB1Q8WTV0 552 aa10.05□□□□□ -0.8
TTC28-201ENST00000397906 SMIM7Q9BQ49 75 aa10.05□□□□□ -0.8
TTC28-201ENST00000397906 MBP02144 154 aa10.05□□□□□ -0.8
TTC28-201ENST00000397906 C14orf79Q96F83 325 aa10.05□□□□□ -0.8
TTC28-201ENST00000397906 SLC17A2O00624 439 aa10.05□□□□□ -0.8
TTC28-201ENST00000397906 FGF2P09038 288 aa10.05□□□□□ -0.8
TTC28-201ENST00000397906 RPUSD3Q6P087 351 aaKnown RBP10.05□□□□□ -0.8
TTC28-201ENST00000397906 MIA3Q5JRA6 1907 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 PNLIPRP3Q17RR3 467 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 GAB4Q2WGN9 574 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 OR13D1Q8NGV5 346 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 LIPGQ9Y5X9 500 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 A0A1W2PN81 502 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 ARG1P05089 322 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 ADRA2AP08913 450 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 CHRNA7P36544 502 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 ATP1A1-AS1Q5TC04 95 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 OR51I2Q9H344 312 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 IL20Q9NYY1 176 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 MMP7P09237 267 aaPredicted RBP10.04□□□□□ -0.8
TTC28-201ENST00000397906 WNT3P56703 355 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 FFAR4Q5NUL3 377 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 OR5AP2Q8NGF4 316 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 SLC25A40Q8TBP6 338 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 ZIC1Q15915 447 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 PPP1R1CQ8WVI7 109 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 ARL2-SNX15V9GYD0 113 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 C9orf40Q8IXQ3 194 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 LFNGQ8NES3 379 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 SLC2A8Q9NY64 477 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 CD80P33681 288 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 AVPI1Q5T686 147 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 CCL8P80075 99 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 ITPKCQ96DU7 683 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 CTDSP1Q9GZU7 261 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 HAND1O96004 215 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 LIFP15018 202 aa10.04□□□□□ -0.8
TTC28-201ENST00000397906 ZCCHC14Q8WYQ9 949 aaKnown RBP10.04□□□□□ -0.8
TTC28-201ENST00000397906 FGF20Q9NP95 211 aaPredicted RBP10.04□□□□□ -0.8
TTC28-201ENST00000397906 TAAR5O14804 337 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 EVX1P49640 407 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 RSPO4Q2I0M5 234 aaPredicted RBP10.03□□□□□ -0.8
TTC28-201ENST00000397906 ETFRF1Q6IPR1 90 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 CNTD2Q9H8S5 307 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 GABRB1P18505 474 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 RELL2Q8NC24 303 aaPredicted RBP10.03□□□□□ -0.8
TTC28-201ENST00000397906 C2CD4CQ8TF44 421 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 OR6C3Q9NZP0 311 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 IGHV3-21A0A0B4J1V1 117 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 LIPT2A6NK58 231 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 CLN8Q9UBY8 286 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 REG1BP48304 166 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 SLC25A30Q5SVS4 291 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 DHRS7BQ6IAN0 325 aaPredicted RBP10.03□□□□□ -0.8
TTC28-201ENST00000397906 HIST1H1DP16402 221 aaKnown RBP10.03□□□□□ -0.8
TTC28-201ENST00000397906 C4orf17Q53FE4 359 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 ZFPL1O95159 310 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 PEBP1P30086 187 aaKnown RBP10.03□□□□□ -0.8
TTC28-201ENST00000397906 MOB1BQ7L9L4 216 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 OR52L2PQ8NGH6 319 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 CYSLTR2Q9NS75 346 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 RNF7Q9UBF6 113 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 ASCC3Q8N3C0 2202 aaKnown RBP10.03□□□□□ -0.8
TTC28-201ENST00000397906 C3orf85A0A1B0GTC6 90 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 A0A1W2PPE3 182 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 OR2B8PP59922 312 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 FAM3AP98173 230 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 ZNF141Q15928 474 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 NSUN5P2Q63ZY6 315 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 OR5R1Q8NH85 324 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 RBPMSQ93062 196 aaKnown RBP10.03□□□□□ -0.8
TTC28-201ENST00000397906 QSER1Q2KHR3 1735 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 JUNBP17275 347 aaPredicted RBP10.03□□□□□ -0.8
TTC28-201ENST00000397906 LINC00303Q3SY05 128 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 MESTQ5EB52 335 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 C2orf50Q96LR7 162 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 LSM2Q9Y333 95 aaKnown RBP10.03□□□□□ -0.8
TTC28-201ENST00000397906 H7BYZ3 331 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 CDC42EP2O14613 210 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 IGFBP7Q16270 282 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 TMEM128Q5BJH2 165 aa10.03□□□□□ -0.8
TTC28-201ENST00000397906 GMPPAQ96IJ6 420 aaPredicted RBP10.03□□□□□ -0.8
TTC28-201ENST00000397906 SIRT5Q9NXA8 310 aa10.02□□□□□ -0.8
TTC28-201ENST00000397906 THYN1Q9P016 225 aa10.02□□□□□ -0.8
TTC28-201ENST00000397906 SPP1P10451 314 aa10.02□□□□□ -0.8
TTC28-201ENST00000397906 PTBP1P26599 531 aaKnown RBP eCLIP10.02□□□□□ -0.88e-7■■■■■ 33.2
TTC28-201ENST00000397906 TRAT1Q6PIZ9 186 aa10.02□□□□□ -0.8
TTC28-201ENST00000397906 OR6X1Q8NH79 312 aa10.02□□□□□ -0.8
TTC28-201ENST00000397906 BTF3L4Q96K17 158 aa10.02□□□□□ -0.8
TTC28-201ENST00000397906 DTX4Q9Y2E6 619 aa10.02□□□□□ -0.8
TTC28-201ENST00000397906 SPINK4O60575 86 aa10.02□□□□□ -0.81
TTC28-201ENST00000397906 SP7Q8TDD2 431 aaPredicted RBP10.02□□□□□ -0.81
TTC28-201ENST00000397906 SIRT3Q9NTG7 399 aaPredicted RBP10.02□□□□□ -0.81
TTC28-201ENST00000397906 MED19A0JLT2 244 aaPredicted RBP10.02□□□□□ -0.81
TTC28-201ENST00000397906 PSG6Q00889 435 aa10.02□□□□□ -0.81
TTC28-201ENST00000397906 ZNF574Q6ZN55 896 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms