RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 PARP12Q9H0J9 701 aaKnown RBP9.77□□□□□ -0.85
CUX1-204ENST00000393824 PRR13Q9NZ81 148 aa9.77□□□□□ -0.85
CUX1-204ENST00000393824 FBLN5Q9UBX5 448 aa9.77□□□□□ -0.85
CUX1-204ENST00000393824 PRODH2Q9UF12 536 aa9.77□□□□□ -0.85
CUX1-204ENST00000393824 STRAPQ9Y3F4 350 aaKnown RBP9.77□□□□□ -0.85
CUX1-204ENST00000393824 CACNA1CQ13936 2221 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 XKRYO14609 159 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 SRSF10O75494 262 aaKnown RBP9.76□□□□□ -0.85
CUX1-204ENST00000393824 DEDDO75618 318 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 BPNT1O95861 308 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 SFTPBP07988 381 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 TCN2P20062 427 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 SLC6A8P48029 635 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 SLC35A1P78382 337 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 CLN3Q13286 438 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 RSPO4Q2I0M5 234 aaPredicted RBP9.76□□□□□ -0.85
CUX1-204ENST00000393824 ZNF674Q2M3X9 581 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 BEND2Q8NDZ0 799 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 NFAM1Q8NET5 270 aaPredicted RBP9.76□□□□□ -0.85
CUX1-204ENST00000393824 OR13C3Q8NGS6 347 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 THAP3Q8WTV1 239 aaPredicted RBP9.76□□□□□ -0.85
CUX1-204ENST00000393824 SLC46A1Q96NT5 459 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 GINS3Q9BRX5 216 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 PRO1933Q9H354 126 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 PTGES2Q9H7Z7 377 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 PLEKHA2Q9HB19 425 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 PADI1Q9ULC6 663 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 MMP24Q9Y5R2 645 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 HS3ST3B1Q9Y662 390 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 BSNQ9UPA5 3926 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 C17orf51A8MQB3 221 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 PRSS47A8MTI9 375 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 A8MWP6 167 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 GMFGO60234 142 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 OR13C7P0DN81 318 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 VSIG8P0DPA2 414 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 HSD11B1P28845 292 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 CAMLGP49069 296 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 GFI1BQ5VTD9 330 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 C6orf15Q6UXA7 325 aaPredicted RBP9.76□□□□□ -0.85
CUX1-204ENST00000393824 ZNF101Q8IZC7 436 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 Q8WTZ3 238 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 NXF5Q9H1B4 397 aaKnown RBP9.76□□□□□ -0.85
CUX1-204ENST00000393824 IL17BQ9UHF5 180 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 TUBD1Q9UJT1 453 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 TCFL5Q9UL49 500 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 FBXO7Q9Y3I1 522 aa9.76□□□□□ -0.85
CUX1-204ENST00000393824 PUS1Q9Y606 427 aaKnown RBP eCLIP9.76□□□□□ -0.85
CUX1-204ENST00000393824 HEATR5AQ86XA9 2040 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 LOC101059948A0A1B0GTJ6 334 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 PRSS37A4D1T9 235 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 MT-ATP6P00846 226 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 CHRM2P08172 466 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 CXCL1P09341 107 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 NKX6-1P78426 367 aaPredicted RBP9.75□□□□□ -0.85
CUX1-204ENST00000393824 EIF3IQ13347 325 aaKnown RBP9.75□□□□□ -0.85
CUX1-204ENST00000393824 HIKESHIQ53FT3 197 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 PRR22Q8IZ63 422 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 OR10AD1Q8NGE0 317 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 OR13C9Q8NGT0 318 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 OR2Y1Q8NGV0 311 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 POC1BQ8TC44 478 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 TAAR8Q969N4 342 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 KTI12Q96EK9 354 aaPredicted RBP9.75□□□□□ -0.85
CUX1-204ENST00000393824 NOL4LQ96MY1 436 aaPredicted RBP9.75□□□□□ -0.85
CUX1-204ENST00000393824 GAL3ST4Q96RP7 486 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 SUCNR1Q9BXA5 334 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 WDR54Q9H977 334 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 ASCL3Q9NQ33 180 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 SIRT7Q9NRC8 400 aa9.75□□□□□ -0.85
CUX1-204ENST00000393824 SCDO00767 359 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 RAMP1O60894 148 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 OR6A2O95222 327 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 IL33O95760 270 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 BGLAPP02818 100 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 GSTP1P09211 210 aaKnown RBP9.74□□□□□ -0.85
CUX1-204ENST00000393824 PI3P19957 117 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 AADACL3Q5VUY0 350 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 SUMF2Q8NBJ7 301 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 OR1N1Q8NGS0 311 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 HPSE2Q8WWQ2 592 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 ADIPOR1Q96A54 375 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 C5orf34Q96MH7 638 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 ABHD6Q9BV23 337 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 NCOR1P1Q9H4R4 102 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 MRPL22Q9NWU5 206 aaKnown RBP9.74□□□□□ -0.85
CUX1-204ENST00000393824 LRP12Q9Y561 859 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 R4GMQ9 66 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 DSPP15924 2871 aaKnown RBP9.74□□□□□ -0.85
CUX1-204ENST00000393824 TRAV36DV7A0A075B6V5 113 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 BORCS7-ASMTA0A0B4J1R7 106 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 IGLV1-36A0A0B4J1U3 117 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 TMEM238LA0A1B0GVL6 79 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 LOC107986453A0A1B0GWG9 222 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 TMEM14DPA8MWL7 114 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 HLA-DQA2P01906 255 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 MSX1P28360 303 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 IL2RGP31785 369 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 P2RY1P47900 373 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 FHITP49789 147 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms