RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SLC25A26Q70HW3 274 aa17.68■□□□□ 0.42
CCDC28B-201ENST00000373602 CITED1Q99966 193 aa17.68■□□□□ 0.42
CCDC28B-201ENST00000373602 C9orf16Q9BUW7 83 aa17.68■□□□□ 0.42
CCDC28B-201ENST00000373602 GMPPBQ9Y5P6 360 aa17.68■□□□□ 0.42
CCDC28B-201ENST00000373602 IGKV1-9A0A0C4DH69 117 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 hCG_1809904A0A1W2PP81 198 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 A0A1W2PPE2 198 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 A0A1W2PR64 198 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 A0A1W2PRV1 198 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 CLPXO76031 633 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 HTR1AP08908 422 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 TGFBR2P37173 567 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 RBP2P50120 134 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 ATP1B3P54709 279 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 UTS2BQ765I0 119 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 EGFL6Q8IUX8 553 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 ASCC1Q8N9N2 400 aaKnown RBP17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 LGALS12Q96DT0 336 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 MEGF9Q9H1U4 602 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 C16orf95Q9H693 158 aa17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 SEBOXQ9HB31 216 aaPredicted RBP17.67■□□□□ 0.42
CCDC28B-201ENST00000373602 TSPAN9O75954 239 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 INMTO95050 263 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 PIPP12273 146 aaPredicted RBP17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 ATF1P18846 271 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 DLX6P56179 175 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 PROK1P58294 105 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 KRTAP10-3P60369 221 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 ERVFRD-1P60508 538 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 BRICD5Q6PL45 260 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 Q8IYB0 196 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 ENTHD1Q8IYW4 607 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 FGGYQ96C11 551 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 PELI1Q96FA3 418 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 SLC29A1Q99808 456 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 SSX3Q99909 188 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 S100A14Q9HCY8 104 aa17.66■□□□□ 0.42
CCDC28B-201ENST00000373602 TMEM82A0PJX8 343 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 C17orf98A8MV24 154 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 J3QLW9 94 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 MPZL2O60487 215 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 ZNF19P17023 458 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 ZNF20P17024 532 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 PRKACBP22694 351 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 AZGP1P25311 298 aaKnown RBP17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 ACTA2P62736 377 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 ACTG2P63267 376 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 ZNF91Q05481 1191 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 OR8H2Q8N162 312 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 RHOXF1Q8NHV9 184 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 EMG1Q92979 244 aaKnown RBP17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 MRPL48Q96GC5 212 aaKnown RBP17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 C4orf36Q96KX1 117 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 SNX22Q96L94 193 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 HHLA2Q9UM44 414 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 TRRAPQ9Y4A5 3859 aa17.65■□□□□ 0.42
CCDC28B-201ENST00000373602 OR4C45A6NMZ5 311 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 H3BUX3 64 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 DBTP11182 482 aaKnown RBP17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 COX7A1P24310 79 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 POU3F4P49335 361 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 MTCP1P56278 107 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 ALKBH1Q13686 389 aaKnown RBP17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 AANATQ16613 207 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 LRRC75BQ2VPJ9 315 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 LHFPL2Q6ZUX7 228 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 PQLC1Q8N2U9 271 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 OR10AC1Q8NH08 325 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 SPSB1Q96BD6 273 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 Q96MT0 163 aa17.64■□□□□ 0.41
CCDC28B-201ENST00000373602 TRBV2A0A0J9YWF9 115 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 EBAG9O00559 213 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 HAND1O96004 215 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 CYB5AP00167 134 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 RBP4P02753 201 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 ZNF728P0DKX0 622 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 BCL3P20749 454 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 NPBWR2P48146 333 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 BMXP51813 675 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 EDDM3BP56851 147 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 GALEQ14376 348 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 ZNF782Q6ZMW2 699 aaPredicted RBP17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 ZBTB49Q6ZSB9 765 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 GDPD3Q7L5L3 318 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 LHFPL3Q86UP9 236 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 FAM58AQ8N1B3 248 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 SYS1Q8N2H4 156 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 OR51A4Q8NGJ6 313 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 OPALINQ96PE5 141 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 MYCBPQ99417 103 aaPredicted RBP17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 ALG8Q9BVK2 526 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 PPA2Q9H2U2 334 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 RBFOX1Q9NWB1 397 aaKnown RBP17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 IL36RNQ9UBH0 155 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 MYRFQ9Y2G1 1151 aa17.63■□□□□ 0.41
CCDC28B-201ENST00000373602 LOC100130705A0A1B0GUX0 176 aa17.62■□□□□ 0.41
CCDC28B-201ENST00000373602 IGHA1P01876 353 aa17.62■□□□□ 0.41
CCDC28B-201ENST00000373602 LGALS4P56470 323 aa17.62■□□□□ 0.41
CCDC28B-201ENST00000373602 MEF2CQ06413 473 aaPredicted RBP17.62■□□□□ 0.41
CCDC28B-201ENST00000373602 PDZK1IP1Q13113 114 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms