RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ZNF674Q2M3X9 581 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 LANCL3Q6ZV70 420 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 CPEB2Q7Z5Q1 589 aaKnown RBP13.88□□□□□ -0.19
HMGA1-202ENST00000347617 PRSS58Q8IYP2 241 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 APCDD1LQ8NCL9 501 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 SEMA6DQ8NFY4 1073 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 OR2AJ1Q8NGZ0 328 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 AKR7LQ8NHP1 331 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 OR51E1Q8TCB6 317 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 HPSE2Q8WWQ2 592 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 MRPL24Q96A35 216 aaKnown RBP13.88□□□□□ -0.19
HMGA1-202ENST00000347617 C14orf144Q96I85 54 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 KLHDC3Q9BQ90 382 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 HIPK2Q9H2X6 1198 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 PRDM13Q9H4Q3 707 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 BANF2Q9H503 90 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 PADI1Q9ULC6 663 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 FBXO7Q9Y3I1 522 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 SDCBPO00560 298 aaPredicted RBP13.87□□□□□ -0.19
HMGA1-202ENST00000347617 GALR2O43603 387 aaPredicted RBP13.87□□□□□ -0.19
HMGA1-202ENST00000347617 OR13C7P0DN81 318 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 HSF1Q00613 529 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 FMODQ06828 376 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 PLCXD2Q0VAA5 305 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 THEM4Q5T1C6 240 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 SLC35E3Q7Z769 313 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 OR5L2Q8NGL0 311 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 OR10G4Q8NGN3 311 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 OR5R1Q8NH85 324 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 TVP23CQ96ET8 276 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 ZPBPQ9BS86 351 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 NELFAQ9H3P2 528 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 NAA60Q9H7X0 242 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 PUS1Q9Y606 427 aaKnown RBP eCLIP13.87□□□□□ -0.19
HMGA1-202ENST00000347617 BDP1A6H8Y1 2624 aa13.87□□□□□ -0.19
HMGA1-202ENST00000347617 LAMA1P25391 3075 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 LOC102723996A0A087X1L8 192 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 NSG1A0A0A6YYJ2 146 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 LNP1A1A4G5 178 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 IFITM10A6NMD0 228 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 ST8SIA3O43173 380 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 HSPB1P04792 205 aaKnown RBP13.86□□□□□ -0.19
HMGA1-202ENST00000347617 HPNP05981 417 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 BLVRBP30043 206 aaPredicted RBP13.86□□□□□ -0.19
HMGA1-202ENST00000347617 SUMO3P55854 103 aaPredicted RBP13.86□□□□□ -0.19
HMGA1-202ENST00000347617 UBE2KP61086 200 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 UBE2V2Q15819 145 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 DPPA3Q6W0C5 159 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 SLC16A14Q7RTX9 510 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 TMEM156Q8N614 296 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 S100PBPQ96BU1 408 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 ABHD14BQ96IU4 210 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 GAL3ST4Q96RP7 486 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 ZNF2Q9BSG1 426 aaPredicted RBP13.86□□□□□ -0.19
HMGA1-202ENST00000347617 WFDC1Q9HC57 220 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 PHF3Q92576 2039 aaKnown RBP13.86□□□□□ -0.19
HMGA1-202ENST00000347617 A0A1W2PNV4 684 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 H3BQ15 152 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 HSPA12AO43301 675 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 SCGB1D2O95969 90 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 HBE1P02100 147 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 TAGLN2P37802 199 aaKnown RBP13.86□□□□□ -0.19
HMGA1-202ENST00000347617 APOBEC1P41238 236 aaKnown RBP13.86□□□□□ -0.19
HMGA1-202ENST00000347617 TMEM187Q14656 261 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 ELOBQ15370 118 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 ABHD12BQ7Z5M8 362 aaPredicted RBP13.86□□□□□ -0.19
HMGA1-202ENST00000347617 RTN4RL2Q86UN3 420 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 COMMD2Q86X83 199 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 HIST3H2BBQ8N257 126 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 FAM213BQ8TBF2 198 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 RBMXL1Q96E39 390 aaKnown RBP13.86□□□□□ -0.19
HMGA1-202ENST00000347617 RTN4RQ9BZR6 473 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 SMOC1Q9H4F8 434 aa13.86□□□□□ -0.19
HMGA1-202ENST00000347617 ZNF724A8MTY0 619 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 HLA-DOBP13765 273 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 DDTP30046 118 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 SFTPDP35247 375 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 GLIPR1P48060 266 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 GRB2P62993 217 aaKnown RBP13.85□□□□□ -0.19
HMGA1-202ENST00000347617 GNMTQ14749 295 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 KCNMB1Q16558 191 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 TCEAL6Q6IPX3 200 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 LGI3Q8N145 548 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 ADPRHL1Q8NDY3 354 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 OR10S1Q8NGN2 331 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 OR10D4PQ8NGN7 298 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 DDIT4LQ96D03 193 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 RAB39BQ96DA2 213 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 C2orf88Q9BSF0 95 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 GPR84Q9NQS5 396 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 ALKBH4Q9NXW9 302 aa13.85□□□□□ -0.19
HMGA1-202ENST00000347617 FAM230AA0A1W2PPH8 454 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 OR5H15A6NDH6 313 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 ANKUB1A6NFN9 424 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 OR5H1A6NKK0 313 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 MKRN2OSH3BPM6 223 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 SRP19P09132 144 aaKnown RBP13.84□□□□□ -0.19
HMGA1-202ENST00000347617 CD59P13987 128 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 PAX1P15863 534 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 DTYMKP23919 212 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms