RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.16□□□□□ -1.26
ATG4A-201ENST00000343524 CLEC4EQ9ULY5 219 aa7.16□□□□□ -1.26
ATG4A-201ENST00000343524 CLDN16Q9Y5I7 305 aa7.16□□□□□ -1.26
ATG4A-201ENST00000343524 R4GMQ9 66 aa7.16□□□□□ -1.26
ATG4A-201ENST00000343524 SPACA6W5XKT8 324 aa7.16□□□□□ -1.26
ATG4A-201ENST00000343524 COL4A2P08572 1712 aa7.16□□□□□ -1.26
ATG4A-201ENST00000343524 MAST4O15021 2626 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 FLNBO75369 2602 aaKnown RBP7.15□□□□□ -1.26
ATG4A-201ENST00000343524 DMDP11532 3685 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 NPIPA5A0A0B4J1W7 369 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 MAP1LC3B2A6NCE7 125 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 CRYM-AS1A6NIL9 109 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 TMEM14DPA8MWL7 114 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 NPIPA7E9PJI5 369 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 SPINT1O43278 529 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 NKX2-2O95096 273 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 TYMSP04818 313 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 NPIPA8P0DM63 369 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 EPHA8P29322 1005 aaPredicted RBP7.15□□□□□ -1.26
ATG4A-201ENST00000343524 GALNSP34059 522 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 GJA4P35212 333 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 PTGER4P35408 488 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 RAB28P51157 221 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 CNN1P51911 297 aaKnown RBP7.15□□□□□ -1.26
ATG4A-201ENST00000343524 RPS20P60866 119 aaKnown RBP7.15□□□□□ -1.26
ATG4A-201ENST00000343524 CSNK2A1P68400 391 aaPredicted RBP7.15□□□□□ -1.26
ATG4A-201ENST00000343524 PAFAH1B2P68402 229 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 NTHL1P78549 312 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 DPTQ07507 201 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 FOXF1Q12946 379 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 UNC119Q13432 240 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 AGBL4Q5VU57 503 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 OR8G2PQ6IF36 304 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 FBXO42Q6P3S6 717 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 KCNIP4Q6PIL6 250 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 DEGS2Q6QHC5 323 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 TEX43Q6ZNM6 134 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 LRTM2Q8N967 370 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 LRRC75AQ8NAA5 344 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 CSNK2A3Q8NEV1 391 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 NUDT10Q8NFP7 164 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 NANOS1Q8WY41 292 aaKnown RBP7.15□□□□□ -1.26
ATG4A-201ENST00000343524 TSLPQ969D9 159 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 ANAPC16Q96DE5 110 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 MS4A10Q96PG2 267 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 TBX15Q96SF7 602 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 AGMATQ9BSE5 352 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 VAMP8Q9BV40 100 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 MAP1LC3BQ9GZQ8 125 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 RBKSQ9H477 322 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 CNTD2Q9H8S5 307 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 GPR35Q9HC97 309 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 AURKAIP1Q9NWT8 199 aaPredicted RBP7.15□□□□□ -1.26
ATG4A-201ENST00000343524 EHFQ9NZC4 300 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 NAT8Q9UHE5 227 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 RNF150Q9ULK6 438 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 LAMP3Q9UQV4 416 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 SLC22A13Q9Y226 551 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 RHBDD3Q9Y3P4 386 aa7.15□□□□□ -1.26
ATG4A-201ENST00000343524 ASH1LQ9NR48 2969 aaKnown RBP7.15□□□□□ -1.27
ATG4A-201ENST00000343524 A0A1B0GV50 99 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 WIPF3A6NGB9 483 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 GPR89AB7ZAQ6 455 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 H3BSH0 61 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 RRP8O43159 456 aaKnown RBP7.15□□□□□ -1.27
ATG4A-201ENST00000343524 AHSA1O95433 338 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 HRASP01112 189 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 HLA-DQA2P01906 255 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 GPR89BP0CG08 455 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 ZNF888P0CJ79 500 aaPredicted RBP7.15□□□□□ -1.27
ATG4A-201ENST00000343524 BCL2P10415 239 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 CEACAM1P13688 526 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 ATP6V0CP27449 155 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 CMPK1P30085 196 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 SRP14P37108 136 aaKnown RBP7.15□□□□□ -1.27
ATG4A-201ENST00000343524 RAB11AP62491 216 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 EWSR1Q01844 656 aaKnown RBP eCLIP7.15□□□□□ -1.27
ATG4A-201ENST00000343524 PLAURQ03405 335 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 BAXQ07812 192 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 ARFRP1Q13795 201 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 ZNF74Q16587 644 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 PCK2Q16822 640 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 ACSF3Q4G176 576 aaPredicted RBP7.15□□□□□ -1.27
ATG4A-201ENST00000343524 C1orf140Q5VVS0 124 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 FAM90A2PQ658T7 463 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 LCN10Q6JVE6 187 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 CXCL17Q6UXB2 119 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 RSPO2Q6UXX9 243 aaPredicted RBP7.15□□□□□ -1.27
ATG4A-201ENST00000343524 RNF44Q7L0R7 432 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 C10orf53Q8N6V4 93 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 ZFP62Q8NB50 900 aaPredicted RBP7.15□□□□□ -1.27
ATG4A-201ENST00000343524 OR4B1Q8NGF8 309 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 OR52N5Q8NH56 324 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 RNASE8Q8TDE3 154 aaKnown RBP7.15□□□□□ -1.27
ATG4A-201ENST00000343524 LMLNQ96KR4 655 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 TSSK2Q96PF2 358 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 NKX3-1Q99801 234 aaPredicted RBP7.15□□□□□ -1.27
ATG4A-201ENST00000343524 GLRX2Q9NS18 164 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 PRR13Q9NZ81 148 aa7.15□□□□□ -1.27
ATG4A-201ENST00000343524 PADI1Q9ULC6 663 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms