RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 ZSCAN4Q8NAM6 433 aaPredicted RBP12.99□□□□□ -0.33
TPM3-208ENST00000341485 PHYHIPLQ96FC7 376 aa12.99□□□□□ -0.33
TPM3-208ENST00000341485 ARPC5LQ9BPX5 153 aa12.99□□□□□ -0.33
TPM3-208ENST00000341485 hCG_38984A0A1B0GV85 526 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 RRP8O43159 456 aaKnown RBP12.98□□□□□ -0.33
TPM3-208ENST00000341485 NRASP01111 189 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 ZNF92Q03936 586 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 SURF2Q15527 256 aaPredicted RBP12.98□□□□□ -0.33
TPM3-208ENST00000341485 TAF9Q16594 264 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 ASCL4Q6XD76 172 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 LHFPL2Q6ZUX7 228 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.98□□□□□ -0.33
TPM3-208ENST00000341485 BHLHE23Q8NDY6 225 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 FNDC9Q8TBE3 224 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 TMEM45BQ96B21 275 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 RRNAD1Q96FB5 475 aaKnown RBP12.98□□□□□ -0.33
TPM3-208ENST00000341485 BORCS8Q96FH0 119 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 WDYHV1Q96HA8 205 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 FAAP24Q9BTP7 215 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 SPEF1Q9Y4P9 236 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 IGKV3D-15A0A087WSY6 115 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 TEX13DA0A0J9YY54 714 aaPredicted RBP12.98□□□□□ -0.33
TPM3-208ENST00000341485 MRPL33O75394 65 aaKnown RBP12.98□□□□□ -0.33
TPM3-208ENST00000341485 CSTBP04080 98 aaKnown RBP12.98□□□□□ -0.33
TPM3-208ENST00000341485 HOXD4P09016 255 aaPredicted RBP12.98□□□□□ -0.33
TPM3-208ENST00000341485 MMP7P09237 267 aaPredicted RBP12.98□□□□□ -0.33
TPM3-208ENST00000341485 PTGER4P35408 488 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 RBP2P50120 134 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 PCBD1P61457 104 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 FAM3AP98173 230 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 IGFL3Q6UXB1 125 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 UNQ6126/PRO20091Q6UXV3 157 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 ZNF100Q8IYN0 542 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 STPG2Q8N412 459 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 MRPS24Q96EL2 167 aaKnown RBP12.98□□□□□ -0.33
TPM3-208ENST00000341485 OR10C1Q96KK4 312 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 AK3Q9UIJ7 227 aa12.98□□□□□ -0.33
TPM3-208ENST00000341485 TNRC6AQ8NDV7 1962 aaKnown RBP12.98□□□□□ -0.33
TPM3-208ENST00000341485 IGKV1-12A0A0C4DH73 117 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 IGKV1D-12P01611 117 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 IGHV3-9P01782 118 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 SNTB1Q13884 538 aaKnown RBP12.97□□□□□ -0.33
TPM3-208ENST00000341485 TSPO2Q5TGU0 170 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 CPNE2Q96FN4 548 aaPredicted RBP12.97□□□□□ -0.33
TPM3-208ENST00000341485 ZNF2Q9BSG1 426 aaPredicted RBP12.97□□□□□ -0.33
TPM3-208ENST00000341485 SHARPINQ9H0F6 387 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 CALHM2Q9HA72 323 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 ZNF391Q9UJN7 358 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 HSF4Q9ULV5 492 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 C14orf166Q9Y224 244 aaKnown RBP12.97□□□□□ -0.33
TPM3-208ENST00000341485 A0A1B0GW55 424 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 F8VVB4 439 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 F8VWA3 439 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 KNG1P01042 644 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 IGHG3P01860 377 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 DUX4L2P0CJ85 424 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 DUX4L3P0CJ86 424 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 DUX4L4P0CJ87 422 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 DUX4L5P0CJ88 424 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 DUX4L6P0CJ89 424 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 DUX4L7P0CJ90 424 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 LYL1P12980 280 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 EDN3P14138 238 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 CHATP28329 748 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 EIF2S3P41091 472 aaKnown RBP12.97□□□□□ -0.33
TPM3-208ENST00000341485 RNPS1Q15287 305 aaKnown RBP12.97□□□□□ -0.33
TPM3-208ENST00000341485 TUSC5Q8IXB3 177 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 POC1AQ8NBT0 407 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 PIK3IP1Q96FE7 263 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 RGCCQ9H4X1 137 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 METTL8Q9H825 291 aaKnown RBP12.97□□□□□ -0.33
TPM3-208ENST00000341485 PARPBPQ9NWS1 579 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 OR5AC2Q9NZP5 309 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 DUX4Q9UBX2 424 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 ANXA10Q9UJ72 324 aa12.97□□□□□ -0.33
TPM3-208ENST00000341485 ZNF587BE7ETH6 402 aa12.96□□□□□ -0.33
TPM3-208ENST00000341485 MKRN2OSH3BPM6 223 aa12.96□□□□□ -0.33
TPM3-208ENST00000341485 PIGYQ3MUY2 71 aa12.96□□□□□ -0.33
TPM3-208ENST00000341485 PAN3Q58A45 887 aaKnown RBP12.96□□□□□ -0.33
TPM3-208ENST00000341485 PABPC1L2AQ5JQF8 200 aa12.96□□□□□ -0.33
TPM3-208ENST00000341485 PRSS54Q6PEW0 395 aa12.96□□□□□ -0.33
TPM3-208ENST00000341485 NAXEQ8NCW5 288 aa12.96□□□□□ -0.33
TPM3-208ENST00000341485 STOML3Q8TAV4 291 aa12.96□□□□□ -0.33
TPM3-208ENST00000341485 C2orf50Q96LR7 162 aa12.96□□□□□ -0.33
TPM3-208ENST00000341485 SULT4A1Q9BR01 284 aa12.96□□□□□ -0.33
TPM3-208ENST00000341485 MS4A7Q9GZW8 240 aaPredicted RBP12.96□□□□□ -0.33
TPM3-208ENST00000341485 LOC105371267A0A1B0GV96 52 aa12.95□□□□□ -0.34
TPM3-208ENST00000341485 MSGN1A6NI15 193 aa12.95□□□□□ -0.34
TPM3-208ENST00000341485 IL15RAQ13261 267 aa12.95□□□□□ -0.34
TPM3-208ENST00000341485 OR8B8Q15620 311 aa12.95□□□□□ -0.34
TPM3-208ENST00000341485 ELP2Q6IA86 826 aa12.95□□□□□ -0.34
TPM3-208ENST00000341485 P4HA3Q7Z4N8 544 aa12.95□□□□□ -0.34
TPM3-208ENST00000341485 FAM219AQ8IW50 185 aa12.95□□□□□ -0.34
TPM3-208ENST00000341485 CPEB3Q8NE35 698 aaKnown RBP12.95□□□□□ -0.34
TPM3-208ENST00000341485 DYRK2Q92630 601 aa12.95□□□□□ -0.34
TPM3-208ENST00000341485 CMSS1Q9BQ75 279 aaKnown RBP12.95□□□□□ -0.34
TPM3-208ENST00000341485 DNTTIP1Q9H147 329 aa12.95□□□□□ -0.34
TPM3-208ENST00000341485 LIME1Q9H400 295 aa12.95□□□□□ -0.34
TPM3-208ENST00000341485 CYTL1Q9NRR1 136 aa12.95□□□□□ -0.34
TPM3-208ENST00000341485 EDARQ9UNE0 448 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms