RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 LHFPL1Q86WI0 220 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 OSR2Q8N2R0 312 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF611Q8N823 705 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 OR5T2Q8NGG2 359 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 SPRY4Q9C004 299 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 LDAHQ9H6V9 325 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 ASF1BQ9NVP2 202 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 IL36RNQ9UBH0 155 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 ANXA10Q9UJ72 324 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 ANAPC10Q9UM13 185 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 OTOGLQ3ZCN5 2332 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 MMP7P09237 267 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-201ENST00000341247 HOXD11P31277 338 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-201ENST00000341247 ALDH3B1P43353 468 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 MEOX1P50221 254 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 NOVA1P51513 510 aaKnown RBP8.95□□□□□ -0.98
LIMA1-201ENST00000341247 SPEM2Q0P670 501 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 PDZK1IP1Q13113 114 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 IKZF1Q13422 519 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 NUFIP2Q7Z417 695 aaKnown RBP8.95□□□□□ -0.98
LIMA1-201ENST00000341247 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-201ENST00000341247 MCEMP1Q8IX19 187 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF100Q8IYN0 542 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 TMEM185AQ8NFB2 350 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 TMED6Q8WW62 240 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 SLAMF9Q96A28 289 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 GPHA2Q96T91 129 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 DDA1Q9BW61 102 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 ABI3Q9P2A4 366 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 CACNA1GO43497 2377 aa8.95□□□□□ -0.98
LIMA1-201ENST00000341247 RIF1Q5UIP0 2472 aaKnown RBP8.95□□□□□ -0.98
LIMA1-201ENST00000341247 RP1L1Q8IWN7 2480 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-201ENST00000341247 F8VVB4 439 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 F8VWA3 439 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 PPIAP62937 165 aaKnown RBP8.94□□□□□ -0.98
LIMA1-201ENST00000341247 PMP22Q01453 160 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 SRSF6Q13247 344 aaKnown RBP8.94□□□□□ -0.98
LIMA1-201ENST00000341247 SPATA46Q5T0L3 261 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 SPERTQ8NA61 448 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 SCGB3A2Q96PL1 93 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 ARPC5LQ9BPX5 153 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 SMIM3Q9BZL3 60 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 HAAOP46952 286 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 PIGPP57054 158 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 SNTB1Q13884 538 aaKnown RBP8.94□□□□□ -0.98
LIMA1-201ENST00000341247 IAH1Q2TAA2 248 aaPredicted RBP8.94□□□□□ -0.98
LIMA1-201ENST00000341247 LHFPL2Q6ZUX7 228 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 BVESQ8NE79 360 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 OR5L1Q8NGL2 311 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 OR11L1Q8NGX0 322 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 NEK7Q8TDX7 302 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 PRSS50Q9UI38 385 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 LSM5Q9Y4Y9 91 aaKnown RBP8.94□□□□□ -0.98
LIMA1-201ENST00000341247 GVINP1Q7Z2Y8 2422 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF816-ZNF321PA0A0X1KG74 233 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 FCGR3AP08637 254 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 RPS2P15880 293 aaKnown RBP8.94□□□□□ -0.98
LIMA1-201ENST00000341247 HLA-GP17693 338 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 FCGR2CP31995 323 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 HIKESHIQ53FT3 197 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 RIPPLY2Q5TAB7 128 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF585AQ6P3V2 769 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 PEG10Q86TG7 708 aaKnown RBP8.94□□□□□ -0.98
LIMA1-201ENST00000341247 C17orf50Q8WW18 174 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 DHRS9Q9BPW9 319 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 RASL12Q9NYN1 266 aa8.94□□□□□ -0.98
LIMA1-201ENST00000341247 TUBAL3A6NHL2 446 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 IFNA2P01563 188 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 IL32P24001 234 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 CHATP28329 748 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 RAB1AP62820 205 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 SRSF4Q08170 494 aaKnown RBP8.93□□□□□ -0.98
LIMA1-201ENST00000341247 ABCA11PQ4W5N1 156 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 MRPL21Q7Z2W9 205 aaKnown RBP8.93□□□□□ -0.98
LIMA1-201ENST00000341247 OR1S2Q8NGQ3 325 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 ASB13Q8WXK3 278 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 MRPL24Q96A35 216 aaKnown RBP8.93□□□□□ -0.98
LIMA1-201ENST00000341247 APH1AQ96BI3 265 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF488Q96MN9 340 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 PARPBPQ9NWS1 579 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 STARD10Q9Y365 291 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 SNAPC5O75971 98 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 BCL3P20749 454 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 DEFA5Q01523 94 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF345Q14585 488 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 SGPP2Q8IWX5 399 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 WNT2BQ93097 391 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 C10orf35Q96D05 121 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF883P0CG24 379 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 FUT6P51993 359 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 PRDX4Q13162 271 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 NMES1Q9C002 83 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 BCO1Q9HAY6 547 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 RAB18Q9NP72 206 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 NUP50Q9UKX7 468 aa8.93□□□□□ -0.98
LIMA1-201ENST00000341247 SLC33A1O00400 549 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 LILRA1O75019 489 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF708P17019 499 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 ZP3P21754 424 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 CALCRP30988 508 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms