RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MASP2O00187 686 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 SLC25A5P05141 298 aaKnown RBP12.82□□□□□ -0.36
COL7A1-201ENST00000328333 VHLLQ6RSH7 139 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 SHISA6Q6ZSJ9 500 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 PTP4A1Q93096 173 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 UBE2FQ969M7 185 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 PIPOXQ9P0Z9 390 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 TET1Q8NFU7 2136 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 HLA-DRB5Q30154 266 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 TMEM116Q8NCL8 245 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 OR51M1Q9H341 326 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 SLC7A10Q9NS82 523 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 LANCL2Q9NS86 450 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 ERVFRD-1P60508 538 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 BHLHE23Q8NDY6 225 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 MOB3AQ96BX8 217 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 INSM2Q96T92 566 aaPredicted RBP12.82□□□□□ -0.36
COL7A1-201ENST00000328333 PRSS1P07477 247 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 CEBPDP49716 269 aaPredicted RBP12.81□□□□□ -0.36
COL7A1-201ENST00000328333 MPV17LQ2QL34 196 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 PSMG4Q5JS54 123 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 SLC25A26Q70HW3 274 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 COL16A1Q07092 1604 aaPredicted RBP12.81□□□□□ -0.36
COL7A1-201ENST00000328333 OPRK1P41145 380 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 FAM109BQ6ICB4 259 aaPredicted RBP12.81□□□□□ -0.36
COL7A1-201ENST00000328333 OPN4Q9UHM6 478 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 DDTP30046 118 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 CLLU1OSQ5K130 101 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 PMCHL2Q9BQD1 86 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 SLC25A37Q9NYZ2 338 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 MYADML2A6NDP7 307 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 ABLIM3O94929 683 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 HLA-DQA1P01909 254 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 APCSP02743 223 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 FAM78BQ5VT40 261 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 LEMD1Q68G75 181 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 MARCH3Q86UD3 253 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 GOSR1O95249 250 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 PPP2CAP67775 309 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 WDR74Q6RFH5 385 aaPredicted RBP12.81□□□□□ -0.36
COL7A1-201ENST00000328333 FBXL17Q9UF56 701 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 ADAM20O43506 726 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 ACTL6AO96019 429 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 ADAT3Q96EY9 351 aaPredicted RBP12.81□□□□□ -0.36
COL7A1-201ENST00000328333 AMMECR1Q9Y4X0 333 aaPredicted RBP12.81□□□□□ -0.36
COL7A1-201ENST00000328333 METAP1P53582 386 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 C12orf73Q69YU5 71 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 H1FOOQ8IZA3 346 aaPredicted RBP12.81□□□□□ -0.36
COL7A1-201ENST00000328333 H3BVH4 76 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 CYBAP13498 195 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 DLX1P56177 255 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 RELBQ01201 579 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 SLC16A13Q7RTY0 426 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 NOXO1Q8NFA2 376 aa12.81□□□□□ -0.36
COL7A1-201ENST00000328333 TMEM33P57088 247 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 PRAMEF20Q5VT98 475 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 ARL6IP6Q8N6S5 226 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 OR10G4Q8NGN3 311 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 OR10G9Q8NGN4 311 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 OR10G7Q8NGN6 311 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 WDR34Q96EX3 536 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 ISG20L2Q9H9L3 353 aaKnown RBP12.8□□□□□ -0.36
COL7A1-201ENST00000328333 NRXN3Q9Y4C0 1643 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 RPL30P62888 115 aaKnown RBP12.8□□□□□ -0.36
COL7A1-201ENST00000328333 ZNF383Q8NA42 475 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 OR4S2Q8NH73 311 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 ELOVL1Q9BW60 279 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 ING1Q9UK53 422 aaPredicted RBP12.8□□□□□ -0.36
COL7A1-201ENST00000328333 TRBV9A0A0B4J1U6 114 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 M0R3E3 92 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 ZNF195O14628 629 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 MAMSTRQ6ZN01 415 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 LIAT1Q6ZQX7 453 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 GAL3ST2Q9H3Q3 398 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 AMDHD2Q9Y303 409 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 CDS2O95674 445 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 SLC25A35Q3KQZ1 300 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 RDH5Q92781 318 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 STRCP1A6NGW2 1772 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 MFSD2BA6NFX1 497 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 JOSD1Q15040 202 aaPredicted RBP12.8□□□□□ -0.36
COL7A1-201ENST00000328333 DEFB133Q30KQ1 61 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 PAM16Q9Y3D7 125 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 SERF2P84101 59 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 NKAIN4Q8IVV8 208 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 RBM38Q9H0Z9 239 aaKnown RBP12.8□□□□□ -0.36
COL7A1-201ENST00000328333 SH3BGRL2Q9UJC5 107 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 SMPD2O60906 423 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 C9orf152Q5JTZ5 239 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 SLC25A30Q5SVS4 291 aa12.8□□□□□ -0.36
COL7A1-201ENST00000328333 C3orf85A0A1B0GTC6 90 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 TMEM272A0A1B0GTI8 110 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 SPNP16150 400 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 VDAC1P21796 283 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 CLDN2P57739 230 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 PARM1Q6UWI2 310 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 OR5AS1Q8N127 324 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 C1QTNF6Q9BXI9 259 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 SIRPB1O00241 398 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 GAPDHP04406 335 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms