RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 GUCA2AQ02747 115 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 ZNF273Q14593 569 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 RCN1Q15293 331 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 HCP5Q6MZN7 132 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 UTS2BQ765I0 119 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 RNF144BQ7Z419 303 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 SYS1Q8N2H4 156 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 TMEM86BQ8N661 226 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 ASCC1Q8N9N2 400 aaKnown RBP13.34□□□□□ -0.27
LSM1-201ENST00000311351 OR13C9Q8NGT0 318 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 CNIH3Q8TBE1 160 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 EMG1Q92979 244 aaKnown RBP13.34□□□□□ -0.27
LSM1-201ENST00000311351 MRPL48Q96GC5 212 aaKnown RBP13.34□□□□□ -0.27
LSM1-201ENST00000311351 RDH12Q96NR8 316 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 SPACA5Q96QH8 159 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 UNKLQ9H9P5 680 aaKnown RBP13.34□□□□□ -0.27
LSM1-201ENST00000311351 RBFOX1Q9NWB1 397 aaKnown RBP13.34□□□□□ -0.27
LSM1-201ENST00000311351 ZNRD1Q9P1U0 126 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 SPRY1O43609 319 aaPredicted RBP13.33□□□□□ -0.28
LSM1-201ENST00000311351 ANGPTL7O43827 346 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 CALCBP10092 127 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 BCL3P20749 454 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 EEF1B2P24534 225 aaKnown RBP13.33□□□□□ -0.28
LSM1-201ENST00000311351 NPBWR2P48146 333 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 ATP1B3P54709 279 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 SNU13P55769 128 aaKnown RBP13.33□□□□□ -0.28
LSM1-201ENST00000311351 RELBQ01201 579 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 BLMHQ13867 455 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 NCR3LG1Q68D85 454 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 TMEM200BQ69YZ2 307 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 C1orf122Q6ZSJ8 110 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 MKXQ8IYA7 352 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 DNAAF1Q8NEP3 725 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 CYGBQ8WWM9 190 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 OPALINQ96PE5 141 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 ZNF747Q9BV97 191 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 INPP5EQ9NRR6 644 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 MRPS18AQ9NVS2 196 aaKnown RBP13.33□□□□□ -0.28
LSM1-201ENST00000311351 FAM96BQ9Y3D0 163 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 RPL36Q9Y3U8 105 aaKnown RBP13.33□□□□□ -0.28
LSM1-201ENST00000311351 POMT1Q9Y6A1 747 aa13.33□□□□□ -0.28
LSM1-201ENST00000311351 MEIOCA2RUB1 952 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 ANKRD65E5RJM6 399 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 GPR137BO60478 399 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 ZNF737O75373 536 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 ZFPL1O95159 310 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 FBP1P09467 338 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 LIMS3P0CW19 117 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 LIMS4P0CW20 117 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 PRKACBP22694 351 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 IER3P46695 156 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 UBE2E1P51965 193 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 RAG2P55895 527 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 MTCP1P56278 107 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 ERVFRD-1P60508 538 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 ZNF691Q5VV52 312 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 LHFPL2Q6ZUX7 228 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 EGFL6Q8IUX8 553 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 OR5D18Q8NGL1 313 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 TBC1D15Q8TC07 691 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 C17orf50Q8WW18 174 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 PDCD1LG2Q9BQ51 273 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 MGAM2Q2M2H8 2515 aa13.32□□□□□ -0.28
LSM1-201ENST00000311351 TMEM82A0PJX8 343 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 K7N7A8 449 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 HAND1O96004 215 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 OCM2P0CE71 109 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 OCMP0CE72 109 aaPredicted RBP13.31□□□□□ -0.28
LSM1-201ENST00000311351 PRKACAP17612 351 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 DUSP1P28562 367 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 GTF2A1P52655 376 aaPredicted RBP13.31□□□□□ -0.28
LSM1-201ENST00000311351 TAF9Q16594 264 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 KLHL22Q53GT1 634 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 XAF1Q6GPH4 301 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 CRIP3Q6Q6R5 217 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 ZNF782Q6ZMW2 699 aaPredicted RBP13.31□□□□□ -0.28
LSM1-201ENST00000311351 C11orf42Q8N5U0 333 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 PACRGLQ8N7B6 248 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 OR5D13Q8NGL4 314 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 SPSB1Q96BD6 273 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 FAM234AQ9H0X4 552 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 FGF20Q9NP95 211 aaPredicted RBP13.31□□□□□ -0.28
LSM1-201ENST00000311351 C1RLQ9NZP8 487 aa13.31□□□□□ -0.28
LSM1-201ENST00000311351 CAB39Q9Y376 341 aaPredicted RBP13.31□□□□□ -0.28
LSM1-201ENST00000311351 IGKV1-12A0A0C4DH73 117 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 TRBV2A0A0J9YWF9 115 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 TMEM212A6NML5 194 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 IGKV1D-12P01611 117 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 CRYBA1P05813 215 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 CHRM2P08172 466 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 CCDC159P0C7I6 412 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 COX7A1P24310 79 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 PAX6P26367 422 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 ETV1P50549 477 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 GBX2P52951 348 aaPredicted RBP13.3□□□□□ -0.28
LSM1-201ENST00000311351 EDDM3BP56851 147 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 PDZK1IP1Q13113 114 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 EDDM3AQ14507 147 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 OR2G6Q5TZ20 316 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 TCF23Q7RTU1 214 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms