RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 TM4SF19Q96DZ7 209 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 MYOZ1Q9NP98 299 aaPredicted RBP17.09■□□□□ 0.33
USP48-201ENST00000308271 TRAPPC1Q9Y5R8 145 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 A0A1B0GTQ1 180 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 UBE2L5PA0A1B0GUS4 154 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 EIF3GO75821 320 aaKnown RBP eCLIP17.09■□□□□ 0.33
USP48-201ENST00000308271 GABRA2P47869 451 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 TIGITQ495A1 244 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 LSRQ86X29 649 aaPredicted RBP17.09■□□□□ 0.33
USP48-201ENST00000308271 ADPRHL1Q8NDY3 354 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 XIRP1Q702N8 1843 aaKnown RBP17.08■□□□□ 0.33
USP48-201ENST00000308271 IGHV3-15A0A0B4J1V0 119 aa17.08■□□□□ 0.33
USP48-201ENST00000308271 Q3ZCU0 254 aa17.08■□□□□ 0.33
USP48-201ENST00000308271 SFTPA1Q8IWL2 248 aa17.08■□□□□ 0.33
USP48-201ENST00000308271 WNT2BQ93097 391 aa17.08■□□□□ 0.33
USP48-201ENST00000308271 C4orf47A7E2U8 309 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 EML2O95834 649 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 THY1P04216 161 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 SUMO1P63165 101 aaKnown RBP17.08■□□□□ 0.32
USP48-201ENST00000308271 HIST1H3AP68431 136 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 TMEM255AQ5JRV8 349 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 OR6X1Q8NH79 312 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 FBXO17Q96EF6 278 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 DTX4Q9Y2E6 619 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 KLHDC1Q8N7A1 406 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 TERTO14746 1132 aaKnown RBP17.08■□□□□ 0.32
USP48-201ENST00000308271 CD74P04233 296 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 NAT2P11245 290 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 PMS2P11Q13670 270 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 CEBPEQ15744 281 aa17.08■□□□□ 0.32
USP48-201ENST00000308271 RALGAPA2Q2PPJ7 1873 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 SH2D1BO14796 132 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 INSM1Q01101 510 aaPredicted RBP17.07■□□□□ 0.32
USP48-201ENST00000308271 EWSR1Q01844 656 aaKnown RBP eCLIP17.07■□□□□ 0.32
USP48-201ENST00000308271 LINC01590Q5TEZ4 76 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 GLRX5Q86SX6 157 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 C10orf35Q96D05 121 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 PITPNC1Q9UKF7 332 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 OR5H15A6NDH6 313 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 OR5H1A6NKK0 313 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 LMO7DNF2Z398 122 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 DNASE2O00115 360 aaPredicted RBP17.07■□□□□ 0.32
USP48-201ENST00000308271 CXCL13O43927 109 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 TSPO2Q5TGU0 170 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 OR10A7Q8NGE5 316 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 AMELYQ99218 206 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 CTDSP1Q9GZU7 261 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 SLC2A9Q9NRM0 540 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 CARHSP1Q9Y2V2 147 aaKnown RBP17.07■□□□□ 0.32
USP48-201ENST00000308271 IGHV5-51A0A0C4DH38 117 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 NGFRP08138 427 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 VDAC1P21796 283 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 BSXQ3C1V8 233 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 ATRAIDQ6UW56 229 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 TOMM20LQ6UXN7 152 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 KCNE4Q8WWG9 221 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 VAMP8Q9BV40 100 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 Q9N2K0 584 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 SLC2A8Q9NY64 477 aa17.07■□□□□ 0.32
USP48-201ENST00000308271 TRIOBPQ9H2D6 2365 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 C4orf51C9J302 202 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 ZNF737O75373 536 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 TMEM267Q0VDI3 215 aaPredicted RBP17.06■□□□□ 0.32
USP48-201ENST00000308271 LANCL3Q6ZV70 420 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 AQP3Q92482 292 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 CORO2AQ92828 525 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 SNX22Q96L94 193 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 MS4A10Q96PG2 267 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 NAT8Q9UHE5 227 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 ALPK2Q86TB3 2170 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 C5orf49A4QMS7 147 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 M0R143 59 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 MOSPD3O75425 235 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 YIF1AO95070 293 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 CST2P09228 141 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 ARL3P36405 182 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 CYB561P49447 251 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 DYNLT3P51808 116 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 PARD6AQ9NPB6 346 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 KIAA1456Q9P272 454 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 TTRP02766 147 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 CCKARP32238 428 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 OR2B11Q5JQS5 317 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 FAM219AQ8IW50 185 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 ADAMTS17Q8TE56 1095 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 ATP5SQ99766 215 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 WDR13Q9H1Z4 485 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 HEXA-AS1Q9H8Q6 139 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 A0A0G2JMZ2 1700 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 LRRC37A2A6NM11 1700 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 LYZL2Q7Z4W2 148 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 FOXB1Q99853 325 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 UTP23Q9BRU9 249 aaKnown RBP17.06■□□□□ 0.32
USP48-201ENST00000308271 SOX7Q9BT81 388 aa17.06■□□□□ 0.32
USP48-201ENST00000308271 ZNF732B4DXR9 585 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 SIRPB1O00241 398 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 MPPED1O15442 326 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 GLB1P16278 677 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 GABRG2P18507 467 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 LSM6P62312 80 aaKnown RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms