RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 S100A13Q99584 98 aa18.63■□□□□ 0.57
HOXD4-201ENST00000306324 CTSZQ9UBR2 303 aa18.63■□□□□ 0.57
HOXD4-201ENST00000306324 ING4Q9UNL4 249 aa18.63■□□□□ 0.57
HOXD4-201ENST00000306324 IGKV1D-17A0A075B6S4 117 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 A0A1B0GW55 424 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 NKX6-3A6NJ46 265 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 KDM4BO94953 1096 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 CDRT1O95170 752 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 LY6G6DO95868 133 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 SFTPBP07988 381 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 DUX4L2P0CJ85 424 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 DUX4L3P0CJ86 424 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 DUX4L4P0CJ87 422 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 DUX4L5P0CJ88 424 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 DUX4L6P0CJ89 424 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 DUX4L7P0CJ90 424 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 ZNF16P17020 682 aaPredicted RBP18.62■□□□□ 0.57
HOXD4-201ENST00000306324 JUNBP17275 347 aaPredicted RBP18.62■□□□□ 0.57
HOXD4-201ENST00000306324 PRKACAP17612 351 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 GALP22466 123 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 PITPNBP48739 271 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 SNU13P55769 128 aaKnown RBP18.62■□□□□ 0.57
HOXD4-201ENST00000306324 GNB2P62879 340 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 LCN2P80188 198 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 KRTAP1-1Q07627 177 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 DUX4L9Q6RFH8 374 aaPredicted RBP18.62■□□□□ 0.57
HOXD4-201ENST00000306324 CLEC9AQ6UXN8 241 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 SLC36A1Q7Z2H8 476 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 FAM58AQ8N1B3 248 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 FAM216BQ8N7L0 139 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 PXT1Q8NFP0 134 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 C1orf159Q96HA4 380 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 OR51E2Q9H255 320 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 GSX1Q9H4S2 264 aaPredicted RBP18.62■□□□□ 0.57
HOXD4-201ENST00000306324 CNTD2Q9H8S5 307 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 DUX4Q9UBX2 424 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 SSR3Q9UNL2 185 aa18.62■□□□□ 0.57
HOXD4-201ENST00000306324 PHF1O43189 567 aaPredicted RBP18.61■□□□□ 0.57
HOXD4-201ENST00000306324 TGFAP01135 160 aa18.61■□□□□ 0.57
HOXD4-201ENST00000306324 AMY2BP19961 511 aa18.61■□□□□ 0.57
HOXD4-201ENST00000306324 CEBPDP49716 269 aaPredicted RBP18.61■□□□□ 0.57
HOXD4-201ENST00000306324 RSU1Q15404 277 aa18.61■□□□□ 0.57
HOXD4-201ENST00000306324 GLT8D1Q68CQ7 371 aa18.61■□□□□ 0.57
HOXD4-201ENST00000306324 FIP1L1Q6UN15 594 aaKnown RBP18.61■□□□□ 0.57
HOXD4-201ENST00000306324 CDH26Q8IXH8 852 aa18.61■□□□□ 0.57
HOXD4-201ENST00000306324 SSBP3Q9BWW4 388 aaPredicted RBP18.61■□□□□ 0.57
HOXD4-201ENST00000306324 MRPS26Q9BYN8 205 aaKnown RBP18.61■□□□□ 0.57
HOXD4-201ENST00000306324 DNTTIP1Q9H147 329 aa18.61■□□□□ 0.57
HOXD4-201ENST00000306324 IL36RNQ9UBH0 155 aa18.61■□□□□ 0.57
HOXD4-201ENST00000306324 KAAG1Q9UBP8 84 aa18.61■□□□□ 0.57
HOXD4-201ENST00000306324 CLN8Q9UBY8 286 aa18.61■□□□□ 0.57
HOXD4-201ENST00000306324 KNG1P01042 644 aa18.6■□□□□ 0.57
HOXD4-201ENST00000306324 MSMBP08118 114 aa18.6■□□□□ 0.57
HOXD4-201ENST00000306324 CPT2P23786 658 aa18.6■□□□□ 0.57
HOXD4-201ENST00000306324 GADD45AP24522 165 aa18.6■□□□□ 0.57
HOXD4-201ENST00000306324 MYL9P24844 172 aa18.6■□□□□ 0.57
HOXD4-201ENST00000306324 IKZF1Q13422 519 aa18.6■□□□□ 0.57
HOXD4-201ENST00000306324 ATPAF1Q5TC12 328 aaPredicted RBP18.6■□□□□ 0.57
HOXD4-201ENST00000306324 ZNF788Q6ZQV5 615 aa18.6■□□□□ 0.57
HOXD4-201ENST00000306324 OR10K1Q8NGX5 313 aa18.6■□□□□ 0.57
HOXD4-201ENST00000306324 GAFA1Q96PS6 74 aa18.6■□□□□ 0.57
HOXD4-201ENST00000306324 CHCHD6Q9BRQ6 235 aa18.6■□□□□ 0.57
HOXD4-201ENST00000306324 TXNL4BQ9NX01 149 aaKnown RBP18.6■□□□□ 0.57
HOXD4-201ENST00000306324 ZNF222Q9UK12 451 aa18.6■□□□□ 0.57
HOXD4-201ENST00000306324 MRPS28Q9Y2Q9 187 aaKnown RBP18.6■□□□□ 0.57
HOXD4-201ENST00000306324 LOC100506127A0A0U1RQW1 187 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 DVL1O14640 695 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 CD5LO43866 347 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 FOXH1O75593 365 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 ZFP36P26651 326 aaKnown RBP18.59■□□□□ 0.57
HOXD4-201ENST00000306324 PRDX2P32119 198 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 IL13RA1P78552 427 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 WDR25Q64LD2 544 aaPredicted RBP18.59■□□□□ 0.57
HOXD4-201ENST00000306324 AWAT2Q6E213 333 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 ZNF841Q6ZN19 808 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 CD177Q8N6Q3 437 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 OR4D6Q8NGJ1 314 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 FOXRED1Q96CU9 486 aaPredicted RBP18.59■□□□□ 0.57
HOXD4-201ENST00000306324 MED30Q96HR3 178 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 UQCC2Q9BRT2 126 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 METTL9Q9H1A3 318 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 RHOFQ9HBH0 211 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 HMG20AQ9NP66 347 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 GSTK1Q9Y2Q3 226 aa18.59■□□□□ 0.57
HOXD4-201ENST00000306324 AK6Q9Y3D8 172 aaKnown RBP18.59■□□□□ 0.57
HOXD4-201ENST00000306324 HTR3BO95264 441 aa18.58■□□□□ 0.57
HOXD4-201ENST00000306324 SELLP14151 372 aa18.58■□□□□ 0.57
HOXD4-201ENST00000306324 DUSP1P28562 367 aa18.58■□□□□ 0.57
HOXD4-201ENST00000306324 FGF9P31371 208 aaPredicted RBP18.58■□□□□ 0.57
HOXD4-201ENST00000306324 ASCL4Q6XD76 172 aa18.58■□□□□ 0.57
HOXD4-201ENST00000306324 Q71RC1 249 aaPredicted RBP18.58■□□□□ 0.57
HOXD4-201ENST00000306324 LYPD6Q86Y78 171 aa18.58■□□□□ 0.57
HOXD4-201ENST00000306324 SIGLEC5O15389 551 aa18.58■□□□□ 0.56
HOXD4-201ENST00000306324 NDUFB3O43676 98 aa18.58■□□□□ 0.56
HOXD4-201ENST00000306324 CSTBP04080 98 aaKnown RBP18.58■□□□□ 0.56
HOXD4-201ENST00000306324 SERPINA2P20848 420 aa18.58■□□□□ 0.56
HOXD4-201ENST00000306324 MTNR1BP49286 362 aa18.58■□□□□ 0.56
HOXD4-201ENST00000306324 NPY4RP50391 375 aa18.58■□□□□ 0.56
HOXD4-201ENST00000306324 SLC22A6Q4U2R8 563 aa18.58■□□□□ 0.56
HOXD4-201ENST00000306324 FAM166AQ6J272 317 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms