RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 LIMK1P53667 647 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 STARD6P59095 220 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 CD226Q15762 336 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 NSUN5P2Q63ZY6 315 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 SLC39A7Q92504 469 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 MRPL24Q96A35 216 aaKnown RBP13.6□□□□□ -0.23
SHH-201ENST00000297261 AICDAQ9GZX7 198 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 MPTX1A8MV57 137 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 GEMIN2O14893 280 aaKnown RBP13.6□□□□□ -0.23
SHH-201ENST00000297261 ID4P47928 161 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 UBE2G2P60604 165 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 DLK1P80370 383 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 MAML2Q8IZL2 1156 aaPredicted RBP13.6□□□□□ -0.23
SHH-201ENST00000297261 DUSP15Q9H1R2 295 aaPredicted RBP13.6□□□□□ -0.23
SHH-201ENST00000297261 PIPOXQ9P0Z9 390 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 ARHGEF17Q96PE2 2063 aaPredicted RBP13.6□□□□□ -0.23
SHH-201ENST00000297261 DNASE2O00115 360 aaPredicted RBP13.6□□□□□ -0.23
SHH-201ENST00000297261 MASP2O00187 686 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 PRSS12P56730 875 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.6□□□□□ -0.23
SHH-201ENST00000297261 ZNF808Q8N4W9 903 aaPredicted RBP13.6□□□□□ -0.23
SHH-201ENST00000297261 KLK13Q9UKR3 277 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 RNF150Q9ULK6 438 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 MRPS18BQ9Y676 258 aaKnown RBP13.6□□□□□ -0.23
SHH-201ENST00000297261 H3BQ15 152 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 APOA2P02652 100 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 FGF8P55075 233 aaPredicted RBP13.6□□□□□ -0.23
SHH-201ENST00000297261 RPP30P78346 268 aaKnown RBP13.6□□□□□ -0.23
SHH-201ENST00000297261 DHODHQ02127 395 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 SMOC1Q9H4F8 434 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 FRG2CA6NGY1 282 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 RNF212BA8MTL3 300 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 CDC14BO60729 498 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 BTCP35070 178 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 ARL3P36405 182 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 RPS16P62249 146 aaKnown RBP13.59□□□□□ -0.23
SHH-201ENST00000297261 VAMP3Q15836 100 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 ARRDC1-AS1Q9H2J1 176 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 PARD6AQ9NPB6 346 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 ZNF586Q9NXT0 402 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 PSENENQ9NZ42 101 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 VSIG8P0DPA2 414 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 GDF1P27539 372 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 B2MP61769 119 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 LRP11Q86VZ4 500 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 LINC00469Q8N7U9 141 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 SIGLECL1Q8N7X8 197 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 MS4A10Q96PG2 267 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 ANKRD10Q9NXR5 420 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.59□□□□□ -0.23
SHH-201ENST00000297261 C4orf47A7E2U8 309 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 ZNF25P17030 456 aaPredicted RBP13.59□□□□□ -0.23
SHH-201ENST00000297261 PTGER4P35408 488 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 NAAAQ02083 359 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 FOXF1Q12946 379 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 C1orf210Q8IVY1 113 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 RPS4Y2Q8TD47 263 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 PARP11Q9NR21 331 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 GNG12Q9UBI6 72 aa13.59□□□□□ -0.23
SHH-201ENST00000297261 MTCL1Q9Y4B5 1905 aaKnown RBP13.59□□□□□ -0.23
SHH-201ENST00000297261 OR2M5A3KFT3 312 aa13.58□□□□□ -0.23
SHH-201ENST00000297261 RRADP55042 308 aa13.58□□□□□ -0.23
SHH-201ENST00000297261 ERVS71-1P61550 626 aa13.58□□□□□ -0.23
SHH-201ENST00000297261 SHBQ15464 509 aa13.58□□□□□ -0.23
SHH-201ENST00000297261 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.58□□□□□ -0.23
SHH-201ENST00000297261 SSX7Q7RTT5 188 aa13.58□□□□□ -0.23
SHH-201ENST00000297261 IL22RA2Q969J5 263 aa13.58□□□□□ -0.23
SHH-201ENST00000297261 GPR87Q9BY21 358 aa13.58□□□□□ -0.23
SHH-201ENST00000297261 TMED3Q9Y3Q3 217 aa13.58□□□□□ -0.23
SHH-201ENST00000297261 EIF1BO60739 113 aaKnown RBP13.58□□□□□ -0.24
SHH-201ENST00000297261 HEXAP06865 529 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 CST2P09228 141 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 DGAT2L6Q6ZPD8 337 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 SLX1AQ9BQ83 275 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 RPH3ALQ9UNE2 315 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 TRAV34A0A0B4J273 112 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 OR5H15A6NDH6 313 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 OR5H1A6NKK0 313 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 SOX15O60248 233 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 ACTL6BO94805 426 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 EIF1P41567 113 aaKnown RBP13.58□□□□□ -0.24
SHH-201ENST00000297261 UBE2V2Q15819 145 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 ZNF141Q15928 474 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 UBALD1Q8TB05 177 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 ST8SIA1Q92185 356 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 IGHV3-15A0A0B4J1V0 119 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 A0A0G2JK05 382 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 ADAM20O43506 726 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 CHRNA7P36544 502 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 GABRA4P48169 554 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 PNLIPRP2P54317 469 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 DEGS2Q6QHC5 323 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 HSF4Q9ULV5 492 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 KCNK7Q9Y2U2 307 aa13.58□□□□□ -0.24
SHH-201ENST00000297261 SDK2Q58EX2 2172 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 A0A1W2PR77 199 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 OR1N1Q8NGS0 311 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 VSTM2LQ96N03 204 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 NAA60Q9H7X0 242 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 KIR3DL2P43630 455 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms