RNA–Protein interactions for RNA: ENST00000216484.6

SPTLC2-201, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC2, Length 8,170 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-201ENST00000216484 PPP1R17O96001 155 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 APELAP0DMC3 54 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 LBX1P52954 281 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 SPANXN1Q5VSR9 72 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 ARIH2OSQ8N7S6 290 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 CCL17Q92583 94 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 CLEC1BQ9P126 229 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 MAP1LC3B2A6NCE7 125 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 ZNF815PA8K554 130 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 B3GALT4O96024 378 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 PGA3P0DJD8 388 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 HIST1H4GQ99525 98 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 SLC25A33Q9BSK2 321 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 VN1R1Q9GZP7 353 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 MAP1LC3BQ9GZQ8 125 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 EIF4E2O60573 245 aaKnown RBP13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 PAFAH1B2P68402 229 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 GUCA2AQ02747 115 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 HERPUD1Q15011 391 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 NOTCH3Q9UM47 2321 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 VAMP5O95183 116 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 PTHLHP12272 177 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 HOXC13P31276 330 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 VWA2Q5GFL6 755 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 OR10G4Q8NGN3 311 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 OR10G9Q8NGN4 311 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 OR10G7Q8NGN6 311 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 KLF13Q9Y2Y9 288 aaPredicted RBP13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 OR10J1P30954 320 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 OR3A4PP47883 348 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 MMP15P51511 669 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 EVX1P49640 407 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 UBE2L3P68036 154 aaKnown RBP13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 PNLIPRP3Q17RR3 467 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 WFDC3Q8IUB2 231 aa13.13□□□□□ -0.31
SPTLC2-201ENST00000216484 DYSFO75923 2080 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 PIK3IP1Q96FE7 263 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 MEGF10Q96KG7 1140 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 OR6C3Q9NZP0 311 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 ZMIZ1Q9ULJ6 1067 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 RIMBP3CA6NJZ7 1639 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 RIMBP3BA6NNM3 1639 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 RIMBP3Q9UFD9 1639 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 PKIAP61925 76 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 FAM181BA6NEQ2 426 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 HIST1H1BP16401 226 aaKnown RBP13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 AVPR2P30518 371 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 SIX1Q15475 284 aaPredicted RBP13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 PERPQ96FX8 193 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 TNFRSF1AP19438 455 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 COX7A1P24310 79 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 METAP1P53582 386 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 RAB24Q969Q5 203 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 DERL3Q96Q80 235 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 MYOZ1Q9NP98 299 aaPredicted RBP13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 PIPOXQ9P0Z9 390 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 PPIL1Q9Y3C6 166 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 MCHR2Q969V1 340 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 OR2A5Q96R48 311 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.12□□□□□ -0.312e-6■■□□□ 13.9
SPTLC2-201ENST00000216484 DSCR3O14972 297 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 HOXD9P28356 352 aaPredicted RBP13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 SSBP1Q04837 148 aaKnown RBP13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 SELENBP1Q13228 472 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 TMEM229BQ8NBD8 167 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 PDLIM5Q96HC4 596 aaKnown RBP13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 SFRP2Q96HF1 295 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 ATRXP46100 2492 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 ARG1P05089 322 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 CIRBPQ14011 172 aaKnown RBP13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 BEND2Q8NDZ0 799 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 NEURL2Q9BR09 285 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 PSG11Q9UQ72 335 aa13.12□□□□□ -0.31
SPTLC2-201ENST00000216484 LAMB1P07942 1786 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 SLC6A1P30531 599 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 KIR3DL2P43630 455 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 FZD2Q14332 565 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 ZNF383Q8NA42 475 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 OIT3Q8WWZ8 545 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 RAB40CQ96S21 281 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 CSNK1G1Q9HCP0 422 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 C4AP0C0L4 1744 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 C4BP0C0L5 1744 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 C11orf94C9JXX5 98 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 PLPP1O14494 284 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 BSGP35613 385 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 ZNF252P-AS1Q0IIN9 211 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 FUT7Q11130 342 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 PDCD1Q15116 288 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 COPS9Q8WXC6 57 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 CACNG5Q9UF02 275 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 ZNF83P51522 516 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 PAQR6Q6TCH4 344 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 SLCO4C1Q6ZQN7 724 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 MRGPREQ86SM8 312 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 OR10G8Q8NGN5 311 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 SMIM14Q96QK8 99 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 SLC46A2Q9BY10 475 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 MED29Q9NX70 200 aa13.11□□□□□ -0.31
SPTLC2-201ENST00000216484 TMED3Q9Y3Q3 217 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms