RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 RBM24Q9BX46 236 aaKnown RBP17.55■□□□□ 0.4
SYNGAP1-227ENST00000638142 SMIM3Q9BZL3 60 aa17.55■□□□□ 0.4
SYNGAP1-227ENST00000638142 MRPS17Q9Y2R5 130 aaKnown RBP17.55■□□□□ 0.4
SYNGAP1-227ENST00000638142 STARD10Q9Y365 291 aa17.55■□□□□ 0.4
SYNGAP1-227ENST00000638142 ASCC3Q8N3C0 2202 aaKnown RBP17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 DBHP09172 617 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 HGFACQ04756 655 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 MYO7BQ6PIF6 2116 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 INTS12Q96CB8 462 aaKnown RBP17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 NAA11Q9BSU3 229 aaPredicted RBP17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 NAA60Q9H7X0 242 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 GPR173Q9NS66 373 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 SCGB1D2O95969 90 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 ID4P47928 161 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 RSU1Q15404 277 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 LCN10Q6JVE6 187 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 NANPQ8TBE9 248 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 SGK3Q96BR1 496 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 AKR1E2Q96JD6 320 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 FAAP24Q9BTP7 215 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 AK3Q9UIJ7 227 aa17.54■□□□□ 0.4
SYNGAP1-227ENST00000638142 TSPAN15O95858 294 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 MBPP02686 304 aaPredicted RBP17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 GLAP06280 429 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 S100A9P06702 114 aaKnown RBP17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 SEC11BP0C7V7 166 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 ZNF728P0DKX0 622 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 TMEM187Q14656 261 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 SNAI3Q3KNW1 292 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 LRTM2Q8N967 370 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 ERGIC1Q969X5 290 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 ZNF251Q9BRH9 671 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 LIME1Q9H400 295 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 FOXD3Q9UJU5 478 aaPredicted RBP17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 MED12Q93074 2177 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 BORCS7-ASMTA0A0B4J1R7 106 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 ZNF850A8MQ14 1090 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 MT-ND4LP03901 98 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 SUCLG1P53597 346 aaKnown RBP17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 EIF2S3LQ2VIR3 472 aaKnown RBP17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 ABCA11PQ4W5N1 156 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 MAML2Q8IZL2 1156 aaPredicted RBP17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 ZNF561Q8N587 486 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 SLC39A7Q92504 469 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 PHF7Q9BWX1 381 aaPredicted RBP17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 SUCNR1Q9BXA5 334 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 ULBP2Q9BZM5 246 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 TUBA4BQ9H853 241 aa17.53■□□□□ 0.4
SYNGAP1-227ENST00000638142 ZNF44P15621 663 aa17.52■□□□□ 0.4
SYNGAP1-227ENST00000638142 AGAP20933 346 aa17.52■□□□□ 0.4
SYNGAP1-227ENST00000638142 MRPS34P82930 218 aaKnown RBP17.52■□□□□ 0.4
SYNGAP1-227ENST00000638142 CNN3Q15417 329 aaKnown RBP17.52■□□□□ 0.4
SYNGAP1-227ENST00000638142 TAF9Q16594 264 aa17.52■□□□□ 0.4
SYNGAP1-227ENST00000638142 FAM27BQ5VT28 67 aa17.52■□□□□ 0.4
SYNGAP1-227ENST00000638142 MRPL14Q6P1L8 145 aaKnown RBP17.52■□□□□ 0.4
SYNGAP1-227ENST00000638142 PPP1R3BQ86XI6 285 aa17.52■□□□□ 0.4
SYNGAP1-227ENST00000638142 SECTM1Q8WVN6 248 aa17.52■□□□□ 0.4
SYNGAP1-227ENST00000638142 RTN4IP1Q8WWV3 396 aaPredicted RBP17.52■□□□□ 0.4
SYNGAP1-227ENST00000638142 TOMM40LQ969M1 308 aa17.52■□□□□ 0.4
SYNGAP1-227ENST00000638142 IGHV3-15A0A0B4J1V0 119 aa17.52■□□□□ 0.39
SYNGAP1-227ENST00000638142 IGHV5-10-1A0A0J9YXX1 117 aa17.52■□□□□ 0.39
SYNGAP1-227ENST00000638142 SGCEO43556 437 aa17.52■□□□□ 0.39
SYNGAP1-227ENST00000638142 DANCRP0C864 163 aa17.52■□□□□ 0.39
SYNGAP1-227ENST00000638142 ACKR3P25106 362 aa17.52■□□□□ 0.39
SYNGAP1-227ENST00000638142 SNCAP37840 140 aa17.52■□□□□ 0.39
SYNGAP1-227ENST00000638142 UCP2P55851 309 aa17.52■□□□□ 0.39
SYNGAP1-227ENST00000638142 GPR157Q5UAW9 335 aa17.52■□□□□ 0.39
SYNGAP1-227ENST00000638142 GUSBP11Q6P575 273 aa17.52■□□□□ 0.39
SYNGAP1-227ENST00000638142 ETV3LQ6ZN32 361 aa17.52■□□□□ 0.39
SYNGAP1-227ENST00000638142 FBXO17Q96EF6 278 aa17.52■□□□□ 0.39
SYNGAP1-227ENST00000638142 A0A1W2PQM1 296 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 ANGPTL7O43827 346 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 GPR137BO60478 399 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 S100A6P06703 90 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 OR5AC1P0C628 307 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 CRYGSP22914 178 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 PMELP40967 661 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 PPT1P50897 306 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 CHAF1BQ13112 559 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 RAET1LQ5VY80 246 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 UCN2Q96RP3 112 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 ZNF576Q9H609 170 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 LUZP4Q9P127 313 aa17.51■□□□□ 0.39
SYNGAP1-227ENST00000638142 H7C1Q1 480 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 FABP1P07148 127 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 CHATP28329 748 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 P2RY1P47900 373 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 RRADP55042 308 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 DSCR4P56555 118 aaPredicted RBP17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 PCOLCEQ15113 449 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 RAB35Q15286 201 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 MIDNQ504T8 468 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 TAAR9Q96RI9 348 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 GINS3Q9BRX5 216 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 ANGPTL4Q9BY76 406 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 SEBOXQ9HB31 216 aaPredicted RBP17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 RPS10P5Q9NQ39 176 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 LINC00587B1AMM8 73 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 ZNF806P0C7X5 589 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 OPRM1P35372 400 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms