RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 COPS3Q9UNS2 423 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 HUWE1Q7Z6Z7 4374 aaKnown RBP13.18□□□□□ -0.3
CLN3-264ENST00000637985 MITFO75030 526 aaPredicted RBP13.17□□□□□ -0.3
CLN3-264ENST00000637985 PF4P02776 101 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 BMXP51813 675 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 ELF3P78545 371 aaPredicted RBP13.17□□□□□ -0.3
CLN3-264ENST00000637985 NKAPLQ5M9Q1 402 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 C1orf146Q5VVC0 180 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 HCP5Q6MZN7 132 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 THAP5Q7Z6K1 395 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 COMMD2Q86X83 199 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 GID4Q8IVV7 300 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 FAM216BQ8N7L0 139 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 OR5A2Q8NGI9 324 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 OR51E1Q8TCB6 317 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 SEH1LQ96EE3 360 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 MED30Q96HR3 178 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 METTL8Q9H825 291 aaKnown RBP13.17□□□□□ -0.3
CLN3-264ENST00000637985 MOB1AQ9H8S9 216 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 GPR84Q9NQS5 396 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 IKZF2Q9UKS7 526 aa13.17□□□□□ -0.3
CLN3-264ENST00000637985 SF3B6Q9Y3B4 125 aaKnown RBP13.17□□□□□ -0.3
CLN3-264ENST00000637985 NKX6-3A6NJ46 265 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 PRR32B1ATL7 298 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 ZNF732B4DXR9 585 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 AKR7A2O43488 359 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 PEX14O75381 377 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 MTRF1O75570 445 aaKnown RBP13.16□□□□□ -0.3
CLN3-264ENST00000637985 ZFPL1O95159 310 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 AMY2BP19961 511 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 PAX6P26367 422 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 GPM6AP51674 278 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 CXCR4P61073 352 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 IKZF1Q13422 519 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 DMRTC1Q5HYR2 192 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 ZNF322Q6U7Q0 402 aaPredicted RBP13.16□□□□□ -0.3
CLN3-264ENST00000637985 ZNF788Q6ZQV5 615 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 BCDIN3DQ7Z5W3 292 aaKnown RBP13.16□□□□□ -0.3
CLN3-264ENST00000637985 SLC35F2Q8IXU6 374 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 ANGPTL6Q8NI99 470 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 ZNF671Q8TAW3 534 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 OR5M11Q96RB7 305 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 CDCA4Q9BXL8 241 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 WDR13Q9H1Z4 485 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 OR51I2Q9H344 312 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 ADGRL4Q9HBW9 690 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 CLN6Q9NWW5 311 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 ENPP5Q9UJA9 477 aa13.16□□□□□ -0.3
CLN3-264ENST00000637985 HYDINQ4G0P3 5121 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 OR5B21A6NL26 309 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 ZNF670-ZNF695F2Z2N8 137 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 M0R1W7 72 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 ANGPTL7O43827 346 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 DHRS3O75911 302 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 GLRA1P23415 457 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 LMO1P25800 156 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 EPHA2P29317 976 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 GMFBP60983 142 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 CEP78Q5JTW2 689 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 MOB3CQ70IA8 216 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 AMIGO2Q86SJ2 522 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 OR5T2Q8NGG2 359 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 DPF1Q92782 380 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 GPR61Q9BZJ8 451 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 SNTG1Q9NSN8 517 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 NLKQ9UBE8 527 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 PIGLQ9Y2B2 252 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 R4GMQ9 66 aa13.15□□□□□ -0.3
CLN3-264ENST00000637985 CSMD3Q7Z407 3707 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 OR2AT4A6NND4 320 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 LOC110117498-PIK3R3F6TDL0 507 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 M0R129 80 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 SIGLEC5O15389 551 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 SRSF10O75494 262 aaKnown RBP13.14□□□□□ -0.31
CLN3-264ENST00000637985 TTRP02766 147 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 ACAA1P09110 424 aaPredicted RBP13.14□□□□□ -0.31
CLN3-264ENST00000637985 CAV3P56539 151 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 MFGE8Q08431 387 aaPredicted RBP13.14□□□□□ -0.31
CLN3-264ENST00000637985 OR5AU1Q8NGC0 362 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 CENPNQ96H22 339 aaPredicted RBP13.14□□□□□ -0.31
CLN3-264ENST00000637985 GAFA1Q96PS6 74 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 IL4I1Q96RQ9 567 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 CIB1Q99828 191 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 APOL4Q9BPW4 351 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 OSBPL10Q9BXB5 764 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 TTTY10Q9BZA0 68 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 RASL12Q9NYN1 266 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 SLC25A10Q9UBX3 287 aaPredicted RBP13.14□□□□□ -0.31
CLN3-264ENST00000637985 WARS2Q9UGM6 360 aaKnown RBP13.14□□□□□ -0.31
CLN3-264ENST00000637985 OR52A1Q9UKL2 312 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 SNX5Q9Y5X3 404 aa13.14□□□□□ -0.31
CLN3-264ENST00000637985 DHRS7CA6NNS2 312 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 RHBDL1O75783 438 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 CIB2O75838 187 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 NRASP01111 189 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 CNN3Q15417 329 aaKnown RBP13.13□□□□□ -0.31
CLN3-264ENST00000637985 DGUOKQ16854 277 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 TCTEX1D4Q5JR98 221 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 ZNF684Q5T5D7 378 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 BCL2L15Q5TBC7 163 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms